Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
UBR4Q5T4S7 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
UBR4Q5T4S7 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
UBR4Q5T4S7 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC12.64□□□□□ -0.39
UBR4Q5T4S7 AC006058.3-201ENST00000606217 1069 ntBASIC12.64□□□□□ -0.39
UBR4Q5T4S7 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC12.64□□□□□ -0.39
UBR4Q5T4S7 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC12.64□□□□□ -0.39
UBR4Q5T4S7 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 PEX7-202ENST00000367756 680 ntTSL 3 BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC12.63□□□□□ -0.39
UBR4Q5T4S7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
UBR4Q5T4S7 AICDA-202ENST00000537228 667 ntTSL 5 BASIC12.62□□□□□ -0.39
UBR4Q5T4S7 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
UBR4Q5T4S7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC12.62□□□□□ -0.39
UBR4Q5T4S7 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC12.62□□□□□ -0.39
UBR4Q5T4S7 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC12.62□□□□□ -0.39
UBR4Q5T4S7 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC12.62□□□□□ -0.39
UBR4Q5T4S7 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC12.62□□□□□ -0.39
UBR4Q5T4S7 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
UBR4Q5T4S7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
UBR4Q5T4S7 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
UBR4Q5T4S7 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC12.62□□□□□ -0.39
UBR4Q5T4S7 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 SHD-204ENST00000599689 1729 ntTSL 5 BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 LBH-205ENST00000407930 756 ntTSL 2 BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 GPALPP1-207ENST00000611650 899 ntBASIC12.61□□□□□ -0.39
UBR4Q5T4S7 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 RARRES2P4-201ENST00000514074 484 ntBASIC12.61□□□□□ -0.39
UBR4Q5T4S7 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
UBR4Q5T4S7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 BX088651.1-201ENST00000540551 451 ntBASIC12.6□□□□□ -0.39
UBR4Q5T4S7 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 AC142381.4-202ENST00000563973 229 ntBASIC12.6□□□□□ -0.39
UBR4Q5T4S7 REST-206ENST00000612429 1376 ntTSL 5 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 REST-207ENST00000616975 1370 ntTSL 5 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 RNA5SP413-201ENST00000516373 109 ntBASIC12.6□□□□□ -0.39
UBR4Q5T4S7 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 AL449106.1-201ENST00000608517 1980 ntBASIC12.6□□□□□ -0.39
UBR4Q5T4S7 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 RPS20-210ENST00000523936 899 ntTSL 2 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
UBR4Q5T4S7 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 MMD2-204ENST00000612910 778 ntTSL 5 BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 ABHD17AP6-201ENST00000458502 1044 ntBASIC12.59□□□□□ -0.39
UBR4Q5T4S7 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 MFSD11-216ENST00000590393 1141 ntBASIC12.59□□□□□ -0.39
UBR4Q5T4S7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC12.59□□□□□ -0.39
UBR4Q5T4S7 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC12.58□□□□□ -0.39
UBR4Q5T4S7 SPI1-203ENST00000533030 661 ntTSL 2 BASIC12.58□□□□□ -0.39
UBR4Q5T4S7 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
UBR4Q5T4S7 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms