Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AC136469.2-201ENST00000623944 1028 ntBASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV40A0A0B4J280 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 MIR3181-201ENST00000578512 73 ntBASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 AC008764.7-201ENST00000593779 1081 ntBASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV40A0A0B4J280 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TRAV40A0A0B4J280 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV40A0A0B4J280 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV40A0A0B4J280 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
TRAV40A0A0B4J280 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC18.33■□□□□ 0.52
TRAV40A0A0B4J280 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.33■□□□□ 0.52
TRAV40A0A0B4J280 pRNA.6-201ENST00000610482 90 ntBASIC18.33■□□□□ 0.52
TRAV40A0A0B4J280 pRNA.5-201ENST00000612139 90 ntBASIC18.33■□□□□ 0.52
TRAV40A0A0B4J280 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
TRAV40A0A0B4J280 pRNA.11-201ENST00000618423 90 ntBASIC18.33■□□□□ 0.52
TRAV40A0A0B4J280 pRNA.13-201ENST00000619112 90 ntBASIC18.33■□□□□ 0.52
TRAV40A0A0B4J280 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV40A0A0B4J280 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV40A0A0B4J280 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV40A0A0B4J280 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV40A0A0B4J280 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC18.32■□□□□ 0.52
TRAV40A0A0B4J280 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.32■□□□□ 0.52
TRAV40A0A0B4J280 CA15P2-201ENST00000611168 834 ntBASIC18.32■□□□□ 0.52
TRAV40A0A0B4J280 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 RASA4CP-201ENST00000424092 1398 ntBASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 AC141586.4-201ENST00000624558 1573 ntBASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 AC099791.1-201ENST00000416440 715 ntBASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 RARRES2P6-201ENST00000567333 442 ntBASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
TRAV40A0A0B4J280 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV40A0A0B4J280 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.29■□□□□ 0.52
TRAV40A0A0B4J280 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV40A0A0B4J280 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV40A0A0B4J280 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
TRAV40A0A0B4J280 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV40A0A0B4J280 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV40A0A0B4J280 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV40A0A0B4J280 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.28■□□□□ 0.52
TRAV40A0A0B4J280 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAV40A0A0B4J280 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV40A0A0B4J280 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV40A0A0B4J280 LINC01124-201ENST00000409786 2117 ntBASIC18.28■□□□□ 0.52
TRAV40A0A0B4J280 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV40A0A0B4J280 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV40A0A0B4J280 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAV40A0A0B4J280 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 218.5 ms