Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Clp1Q99LI9 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Clp1Q99LI9 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Clp1Q99LI9 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Clp1Q99LI9 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
Clp1Q99LI9 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
Clp1Q99LI9 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.58■■□□□ 1.05
Clp1Q99LI9 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC21.58■■□□□ 1.05
Clp1Q99LI9 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Clp1Q99LI9 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Clp1Q99LI9 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Clp1Q99LI9 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Clp1Q99LI9 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Clp1Q99LI9 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC21.57■■□□□ 1.04
Clp1Q99LI9 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Clp1Q99LI9 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Clp1Q99LI9 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Clp1Q99LI9 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Clp1Q99LI9 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Clp1Q99LI9 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Clp1Q99LI9 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Clp1Q99LI9 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Clp1Q99LI9 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
Clp1Q99LI9 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.55■■□□□ 1.04
Clp1Q99LI9 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Clp1Q99LI9 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.55■■□□□ 1.04
Clp1Q99LI9 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Clp1Q99LI9 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Clp1Q99LI9 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Clp1Q99LI9 AC153962.1-201ENSMUST00000218530 1948 ntBASIC21.55■■□□□ 1.04
Clp1Q99LI9 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC21.55■■□□□ 1.04
Clp1Q99LI9 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Clp1Q99LI9 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Clp1Q99LI9 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Clp1Q99LI9 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Clp1Q99LI9 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC21.54■■□□□ 1.04
Clp1Q99LI9 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC21.54■■□□□ 1.04
Clp1Q99LI9 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Clp1Q99LI9 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Clp1Q99LI9 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.54■■□□□ 1.04
Clp1Q99LI9 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Clp1Q99LI9 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Clp1Q99LI9 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Clp1Q99LI9 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Clp1Q99LI9 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Clp1Q99LI9 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Clp1Q99LI9 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Clp1Q99LI9 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Clp1Q99LI9 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC21.53■■□□□ 1.04
Clp1Q99LI9 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC21.53■■□□□ 1.04
Clp1Q99LI9 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Clp1Q99LI9 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Clp1Q99LI9 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Clp1Q99LI9 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Clp1Q99LI9 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Clp1Q99LI9 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Clp1Q99LI9 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Clp1Q99LI9 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Clp1Q99LI9 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Clp1Q99LI9 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.51■■□□□ 1.03
Clp1Q99LI9 H3f3aos-201ENSMUST00000097448 2905 ntBASIC21.5■■□□□ 1.03
Clp1Q99LI9 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Clp1Q99LI9 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC21.5■■□□□ 1.03
Clp1Q99LI9 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21.5■■□□□ 1.03
Clp1Q99LI9 AC137127.1-201ENSMUST00000213466 1078 ntBASIC21.5■■□□□ 1.03
Clp1Q99LI9 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Clp1Q99LI9 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Clp1Q99LI9 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Clp1Q99LI9 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Clp1Q99LI9 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.49■■□□□ 1.03
Clp1Q99LI9 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Clp1Q99LI9 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Clp1Q99LI9 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Clp1Q99LI9 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Clp1Q99LI9 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
Clp1Q99LI9 Gm12933-201ENSMUST00000120203 872 ntBASIC21.48■■□□□ 1.03
Clp1Q99LI9 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC21.48■■□□□ 1.03
Clp1Q99LI9 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Clp1Q99LI9 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Clp1Q99LI9 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Clp1Q99LI9 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
Clp1Q99LI9 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Clp1Q99LI9 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Clp1Q99LI9 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Clp1Q99LI9 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC21.47■■□□□ 1.03
Clp1Q99LI9 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC21.47■■□□□ 1.03
Clp1Q99LI9 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21.47■■□□□ 1.03
Clp1Q99LI9 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Clp1Q99LI9 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Clp1Q99LI9 Gm10602-201ENSMUST00000098239 609 ntBASIC21.47■■□□□ 1.03
Clp1Q99LI9 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Clp1Q99LI9 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Clp1Q99LI9 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Clp1Q99LI9 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Clp1Q99LI9 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Clp1Q99LI9 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Clp1Q99LI9 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Clp1Q99LI9 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
Clp1Q99LI9 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Clp1Q99LI9 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC21.46■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 107.6 ms