Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sh3rf1Q69ZI1 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Sh3rf1Q69ZI1 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf1Q69ZI1 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf1Q69ZI1 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf1Q69ZI1 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf1Q69ZI1 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf1Q69ZI1 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Sh3rf1Q69ZI1 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.43■□□□□ 0.86
Sh3rf1Q69ZI1 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC20.43■□□□□ 0.86
Sh3rf1Q69ZI1 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.43■□□□□ 0.86
Sh3rf1Q69ZI1 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC20.43■□□□□ 0.86
Sh3rf1Q69ZI1 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf1Q69ZI1 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sh3rf1Q69ZI1 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.42■□□□□ 0.86
Sh3rf1Q69ZI1 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf1Q69ZI1 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf1Q69ZI1 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf1Q69ZI1 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Sh3rf1Q69ZI1 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf1Q69ZI1 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf1Q69ZI1 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf1Q69ZI1 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sh3rf1Q69ZI1 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
Sh3rf1Q69ZI1 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sh3rf1Q69ZI1 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sh3rf1Q69ZI1 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Sh3rf1Q69ZI1 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sh3rf1Q69ZI1 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sh3rf1Q69ZI1 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sh3rf1Q69ZI1 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.4■□□□□ 0.86
Sh3rf1Q69ZI1 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Sh3rf1Q69ZI1 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Sh3rf1Q69ZI1 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Sh3rf1Q69ZI1 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Sh3rf1Q69ZI1 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Sh3rf1Q69ZI1 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Sh3rf1Q69ZI1 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC20.39■□□□□ 0.85
Sh3rf1Q69ZI1 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Sh3rf1Q69ZI1 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.39■□□□□ 0.85
Sh3rf1Q69ZI1 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Gm40881-201ENSMUST00000223397 166 ntBASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sh3rf1Q69ZI1 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Sh3rf1Q69ZI1 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sh3rf1Q69ZI1 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Sh3rf1Q69ZI1 Gm11847-201ENSMUST00000125165 1119 ntBASIC20.37■□□□□ 0.85
Sh3rf1Q69ZI1 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sh3rf1Q69ZI1 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Sh3rf1Q69ZI1 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sh3rf1Q69ZI1 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sh3rf1Q69ZI1 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
Sh3rf1Q69ZI1 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sh3rf1Q69ZI1 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sh3rf1Q69ZI1 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Sh3rf1Q69ZI1 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sh3rf1Q69ZI1 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sh3rf1Q69ZI1 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Sh3rf1Q69ZI1 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sh3rf1Q69ZI1 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sh3rf1Q69ZI1 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC20.35■□□□□ 0.85
Sh3rf1Q69ZI1 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.35■□□□□ 0.85
Sh3rf1Q69ZI1 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sh3rf1Q69ZI1 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms