Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Clcn1Q64347 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC25.74■■□□□ 1.71
Clcn1Q64347 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Clcn1Q64347 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC25.74■■□□□ 1.71
Clcn1Q64347 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Clcn1Q64347 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Clcn1Q64347 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Clcn1Q64347 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
Clcn1Q64347 Gm42642-201ENSMUST00000200683 355 ntBASIC25.73■■□□□ 1.71
Clcn1Q64347 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Clcn1Q64347 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Clcn1Q64347 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Clcn1Q64347 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Clcn1Q64347 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Clcn1Q64347 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC25.72■■□□□ 1.71
Clcn1Q64347 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC25.72■■□□□ 1.71
Clcn1Q64347 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC25.72■■□□□ 1.71
Clcn1Q64347 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Clcn1Q64347 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Clcn1Q64347 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Clcn1Q64347 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
Clcn1Q64347 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Clcn1Q64347 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Clcn1Q64347 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Clcn1Q64347 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Clcn1Q64347 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Clcn1Q64347 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
Clcn1Q64347 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Clcn1Q64347 AC164883.3-201ENSMUST00000227396 1774 ntBASIC25.71■■□□□ 1.71
Clcn1Q64347 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Clcn1Q64347 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
Clcn1Q64347 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
Clcn1Q64347 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC25.7■■□□□ 1.7
Clcn1Q64347 Gm27405-201ENSMUST00000184201 112 ntBASIC25.7■■□□□ 1.7
Clcn1Q64347 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC25.7■■□□□ 1.7
Clcn1Q64347 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC25.7■■□□□ 1.7
Clcn1Q64347 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Clcn1Q64347 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.7
Clcn1Q64347 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Clcn1Q64347 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Clcn1Q64347 Gm10209-201ENSMUST00000203397 1607 ntBASIC25.7■■□□□ 1.7
Clcn1Q64347 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Clcn1Q64347 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Clcn1Q64347 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
Clcn1Q64347 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Clcn1Q64347 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Clcn1Q64347 AC099934.2-201ENSMUST00000196389 70 ntBASIC25.69■■□□□ 1.7
Clcn1Q64347 AC156953.1-201ENSMUST00000196953 70 ntBASIC25.69■■□□□ 1.7
Clcn1Q64347 AC157822.2-201ENSMUST00000200291 70 ntBASIC25.69■■□□□ 1.7
Clcn1Q64347 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC25.69■■□□□ 1.7
Clcn1Q64347 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC25.69■■□□□ 1.7
Clcn1Q64347 Gm42418-201ENSMUST00000182010 1831 ntBASIC25.69■■□□□ 1.7
Clcn1Q64347 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Clcn1Q64347 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Clcn1Q64347 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Clcn1Q64347 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
Clcn1Q64347 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC25.68■■□□□ 1.7
Clcn1Q64347 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Clcn1Q64347 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Clcn1Q64347 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Clcn1Q64347 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Clcn1Q64347 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Clcn1Q64347 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC25.67■■□□□ 1.7
Clcn1Q64347 Smad6-203ENSMUST00000179458 273 ntBASIC25.67■■□□□ 1.7
Clcn1Q64347 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Clcn1Q64347 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Clcn1Q64347 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Clcn1Q64347 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Clcn1Q64347 Gm10129-202ENSMUST00000193100 1316 ntBASIC25.66■■□□□ 1.7
Clcn1Q64347 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Clcn1Q64347 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
Clcn1Q64347 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC25.66■■□□□ 1.7
Clcn1Q64347 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Clcn1Q64347 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
Clcn1Q64347 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
Clcn1Q64347 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Clcn1Q64347 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC25.65■■□□□ 1.7
Clcn1Q64347 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC25.65■■□□□ 1.7
Clcn1Q64347 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
Clcn1Q64347 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Clcn1Q64347 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Clcn1Q64347 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
Clcn1Q64347 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Clcn1Q64347 AC165080.2-201ENSMUST00000217491 1530 ntBASIC25.64■■□□□ 1.7
Clcn1Q64347 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC25.64■■□□□ 1.7
Clcn1Q64347 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
Clcn1Q64347 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Clcn1Q64347 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC25.64■■□□□ 1.69
Clcn1Q64347 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.69
Clcn1Q64347 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC25.63■■□□□ 1.69
Clcn1Q64347 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
Clcn1Q64347 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Clcn1Q64347 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Clcn1Q64347 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Clcn1Q64347 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Clcn1Q64347 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC25.63■■□□□ 1.69
Clcn1Q64347 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Clcn1Q64347 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Clcn1Q64347 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Clcn1Q64347 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC25.63■■□□□ 1.69
Retrieved 100 of 76,532 protein–RNA pairs in 71.2 ms