Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ddx56Q9D0R4 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
Ddx56Q9D0R4 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ddx56Q9D0R4 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Ddx56Q9D0R4 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ddx56Q9D0R4 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC21.39■■□□□ 1.01
Ddx56Q9D0R4 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Ddx56Q9D0R4 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ddx56Q9D0R4 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ddx56Q9D0R4 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ddx56Q9D0R4 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ddx56Q9D0R4 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
Ddx56Q9D0R4 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ddx56Q9D0R4 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ddx56Q9D0R4 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.38■■□□□ 1.01
Ddx56Q9D0R4 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ddx56Q9D0R4 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ddx56Q9D0R4 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ddx56Q9D0R4 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ddx56Q9D0R4 Hsf1-207ENSMUST00000228371 2102 ntBASIC21.38■■□□□ 1.01
Ddx56Q9D0R4 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Ddx56Q9D0R4 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Ddx56Q9D0R4 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Ddx56Q9D0R4 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Ddx56Q9D0R4 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
Ddx56Q9D0R4 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ddx56Q9D0R4 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.37■■□□□ 1.01
Ddx56Q9D0R4 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Ddx56Q9D0R4 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
Ddx56Q9D0R4 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Ddx56Q9D0R4 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC21.36■■□□□ 1.01
Ddx56Q9D0R4 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC21.36■■□□□ 1.01
Ddx56Q9D0R4 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Ddx56Q9D0R4 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ddx56Q9D0R4 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ddx56Q9D0R4 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ddx56Q9D0R4 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ddx56Q9D0R4 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ddx56Q9D0R4 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.35■■□□□ 1.01
Ddx56Q9D0R4 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ddx56Q9D0R4 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Ddx56Q9D0R4 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ddx56Q9D0R4 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ddx56Q9D0R4 Gm45102-201ENSMUST00000207427 857 ntBASIC21.34■■□□□ 1.01
Ddx56Q9D0R4 Rps24-207ENSMUST00000224568 714 ntBASIC21.34■■□□□ 1.01
Ddx56Q9D0R4 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ddx56Q9D0R4 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ddx56Q9D0R4 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ddx56Q9D0R4 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ddx56Q9D0R4 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Ddx56Q9D0R4 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ddx56Q9D0R4 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ddx56Q9D0R4 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ddx56Q9D0R4 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ddx56Q9D0R4 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddx56Q9D0R4 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC21.32■■□□□ 1
Ddx56Q9D0R4 Gm14117-201ENSMUST00000122417 843 ntBASIC21.32■■□□□ 1
Ddx56Q9D0R4 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddx56Q9D0R4 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddx56Q9D0R4 Gm9870-201ENSMUST00000063874 645 ntBASIC21.32■■□□□ 1
Ddx56Q9D0R4 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddx56Q9D0R4 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ddx56Q9D0R4 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddx56Q9D0R4 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx56Q9D0R4 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx56Q9D0R4 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC21.31■■□□□ 1
Ddx56Q9D0R4 Gm22238-201ENSMUST00000175222 88 ntBASIC21.31■■□□□ 1
Ddx56Q9D0R4 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC21.31■■□□□ 1
Ddx56Q9D0R4 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx56Q9D0R4 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx56Q9D0R4 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx56Q9D0R4 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx56Q9D0R4 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ddx56Q9D0R4 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ddx56Q9D0R4 AC152827.1-201ENSMUST00000221143 2189 ntBASIC21.3■■□□□ 1
Ddx56Q9D0R4 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ddx56Q9D0R4 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ddx56Q9D0R4 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Ddx56Q9D0R4 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC21.3■■□□□ 1
Ddx56Q9D0R4 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Ddx56Q9D0R4 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddx56Q9D0R4 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Ddx56Q9D0R4 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ddx56Q9D0R4 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC21.3■■□□□ 1
Ddx56Q9D0R4 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ddx56Q9D0R4 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Ddx56Q9D0R4 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddx56Q9D0R4 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC21.29■■□□□ 1
Ddx56Q9D0R4 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddx56Q9D0R4 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.29■■□□□ 1
Ddx56Q9D0R4 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC21.29■■□□□ 1
Ddx56Q9D0R4 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC21.29■■□□□ 1
Ddx56Q9D0R4 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddx56Q9D0R4 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddx56Q9D0R4 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddx56Q9D0R4 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddx56Q9D0R4 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ddx56Q9D0R4 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21.28■■□□□ 1
Ddx56Q9D0R4 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Ddx56Q9D0R4 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms