Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cdk5rap3Q99LM2 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
Cdk5rap3Q99LM2 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cdk5rap3Q99LM2 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cdk5rap3Q99LM2 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC21.06■□□□□ 0.96
Cdk5rap3Q99LM2 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Cdk5rap3Q99LM2 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cdk5rap3Q99LM2 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC21.05■□□□□ 0.96
Cdk5rap3Q99LM2 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cdk5rap3Q99LM2 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cdk5rap3Q99LM2 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Cdk5rap3Q99LM2 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cdk5rap3Q99LM2 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cdk5rap3Q99LM2 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cdk5rap3Q99LM2 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC21.05■□□□□ 0.96
Cdk5rap3Q99LM2 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21.05■□□□□ 0.96
Cdk5rap3Q99LM2 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cdk5rap3Q99LM2 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cdk5rap3Q99LM2 Gm4430-201ENSMUST00000192413 1943 ntBASIC21.04■□□□□ 0.96
Cdk5rap3Q99LM2 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.04■□□□□ 0.96
Cdk5rap3Q99LM2 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC21.04■□□□□ 0.96
Cdk5rap3Q99LM2 Gm5131-201ENSMUST00000212776 1238 ntBASIC21.04■□□□□ 0.96
Cdk5rap3Q99LM2 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cdk5rap3Q99LM2 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cdk5rap3Q99LM2 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC21.04■□□□□ 0.96
Cdk5rap3Q99LM2 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Cdk5rap3Q99LM2 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cdk5rap3Q99LM2 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Cdk5rap3Q99LM2 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cdk5rap3Q99LM2 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Cdk5rap3Q99LM2 Gm13238-201ENSMUST00000117655 780 ntBASIC21.03■□□□□ 0.96
Cdk5rap3Q99LM2 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC21.03■□□□□ 0.96
Cdk5rap3Q99LM2 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cdk5rap3Q99LM2 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cdk5rap3Q99LM2 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cdk5rap3Q99LM2 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cdk5rap3Q99LM2 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cdk5rap3Q99LM2 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC21.03■□□□□ 0.96
Cdk5rap3Q99LM2 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cdk5rap3Q99LM2 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cdk5rap3Q99LM2 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cdk5rap3Q99LM2 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdk5rap3Q99LM2 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cdk5rap3Q99LM2 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cdk5rap3Q99LM2 Gm43566-201ENSMUST00000196851 808 ntBASIC21■□□□□ 0.95
Cdk5rap3Q99LM2 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC21■□□□□ 0.95
Cdk5rap3Q99LM2 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cdk5rap3Q99LM2 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC21■□□□□ 0.95
Cdk5rap3Q99LM2 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Cdk5rap3Q99LM2 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cdk5rap3Q99LM2 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
Cdk5rap3Q99LM2 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cdk5rap3Q99LM2 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cdk5rap3Q99LM2 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cdk5rap3Q99LM2 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.99■□□□□ 0.95
Cdk5rap3Q99LM2 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cdk5rap3Q99LM2 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Cdk5rap3Q99LM2 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Gm5921-201ENSMUST00000075898 882 ntBASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdk5rap3Q99LM2 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Cdk5rap3Q99LM2 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms