Protein–RNA interactions for Protein: P22090

RPS4Y1, 40S ribosomal protein S4, Y isoform 1, humanhuman

Known RBP Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y1P22090 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RPS4Y1P22090 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.87■□□□□ 0.93
RPS4Y1P22090 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
RPS4Y1P22090 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
RPS4Y1P22090 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.87■□□□□ 0.93
RPS4Y1P22090 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.87■□□□□ 0.93
RPS4Y1P22090 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RPS4Y1P22090 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RPS4Y1P22090 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.87■□□□□ 0.93
RPS4Y1P22090 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RPS4Y1P22090 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
RPS4Y1P22090 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.86■□□□□ 0.93
RPS4Y1P22090 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RPS4Y1P22090 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RPS4Y1P22090 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.86■□□□□ 0.93
RPS4Y1P22090 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RPS4Y1P22090 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.86■□□□□ 0.93
RPS4Y1P22090 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RPS4Y1P22090 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RPS4Y1P22090 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
RPS4Y1P22090 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RPS4Y1P22090 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RPS4Y1P22090 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RPS4Y1P22090 AC021242.3-201ENST00000607598 1377 ntBASIC20.85■□□□□ 0.93
RPS4Y1P22090 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RPS4Y1P22090 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RPS4Y1P22090 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RPS4Y1P22090 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RPS4Y1P22090 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.84■□□□□ 0.93
RPS4Y1P22090 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.84■□□□□ 0.93
RPS4Y1P22090 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
RPS4Y1P22090 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RPS4Y1P22090 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
RPS4Y1P22090 AC133561.1-201ENST00000568600 2415 ntBASIC20.84■□□□□ 0.93
RPS4Y1P22090 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RPS4Y1P22090 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.84■□□□□ 0.93
RPS4Y1P22090 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
RPS4Y1P22090 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.83■□□□□ 0.93
RPS4Y1P22090 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
RPS4Y1P22090 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
RPS4Y1P22090 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RPS4Y1P22090 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.83■□□□□ 0.93
RPS4Y1P22090 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RPS4Y1P22090 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.83■□□□□ 0.92
RPS4Y1P22090 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RPS4Y1P22090 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RPS4Y1P22090 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
RPS4Y1P22090 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
RPS4Y1P22090 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RPS4Y1P22090 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
RPS4Y1P22090 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
RPS4Y1P22090 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RPS4Y1P22090 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RPS4Y1P22090 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RPS4Y1P22090 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.82■□□□□ 0.92
RPS4Y1P22090 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RPS4Y1P22090 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RPS4Y1P22090 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
RPS4Y1P22090 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RPS4Y1P22090 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.81■□□□□ 0.92
RPS4Y1P22090 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.81■□□□□ 0.92
RPS4Y1P22090 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.8■□□□□ 0.92
RPS4Y1P22090 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RPS4Y1P22090 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RPS4Y1P22090 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RPS4Y1P22090 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.8■□□□□ 0.92
RPS4Y1P22090 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RPS4Y1P22090 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RPS4Y1P22090 C9orf163-202ENST00000624034 2573 ntBASIC20.8■□□□□ 0.92
RPS4Y1P22090 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
RPS4Y1P22090 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RPS4Y1P22090 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
RPS4Y1P22090 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.8■□□□□ 0.92
RPS4Y1P22090 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.8■□□□□ 0.92
RPS4Y1P22090 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.8■□□□□ 0.92
RPS4Y1P22090 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.8■□□□□ 0.92
RPS4Y1P22090 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.8■□□□□ 0.92
RPS4Y1P22090 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RPS4Y1P22090 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RPS4Y1P22090 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.8■□□□□ 0.92
RPS4Y1P22090 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
RPS4Y1P22090 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.79■□□□□ 0.92
RPS4Y1P22090 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.79■□□□□ 0.92
RPS4Y1P22090 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RPS4Y1P22090 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RPS4Y1P22090 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
RPS4Y1P22090 BX664725.1-201ENST00000438252 379 ntBASIC20.79■□□□□ 0.92
RPS4Y1P22090 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.79■□□□□ 0.92
RPS4Y1P22090 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.79■□□□□ 0.92
RPS4Y1P22090 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
RPS4Y1P22090 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.78■□□□□ 0.92
RPS4Y1P22090 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.78■□□□□ 0.92
RPS4Y1P22090 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.78■□□□□ 0.92
RPS4Y1P22090 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.78■□□□□ 0.92
RPS4Y1P22090 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.78■□□□□ 0.92
RPS4Y1P22090 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RPS4Y1P22090 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.78■□□□□ 0.92
RPS4Y1P22090 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.78■□□□□ 0.92
RPS4Y1P22090 MIR6722-201ENST00000617286 78 ntBASIC20.78■□□□□ 0.92
RPS4Y1P22090 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms