Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ddx56Q9D0R4 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ddx56Q9D0R4 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC21.5■■□□□ 1.03
Ddx56Q9D0R4 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ddx56Q9D0R4 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ddx56Q9D0R4 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ddx56Q9D0R4 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ddx56Q9D0R4 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Ddx56Q9D0R4 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ddx56Q9D0R4 Gm7417-201ENSMUST00000192950 473 ntBASIC21.49■■□□□ 1.03
Ddx56Q9D0R4 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Ddx56Q9D0R4 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Ddx56Q9D0R4 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Ddx56Q9D0R4 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddx56Q9D0R4 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddx56Q9D0R4 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddx56Q9D0R4 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddx56Q9D0R4 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ddx56Q9D0R4 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ddx56Q9D0R4 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Etf1-202ENSMUST00000180351 108 ntBASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ddx56Q9D0R4 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddx56Q9D0R4 Snhg20-203ENSMUST00000182811 2153 ntBASIC21.46■■□□□ 1.03
Ddx56Q9D0R4 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddx56Q9D0R4 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.46■■□□□ 1.03
Ddx56Q9D0R4 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Ddx56Q9D0R4 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
Ddx56Q9D0R4 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddx56Q9D0R4 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddx56Q9D0R4 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddx56Q9D0R4 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ddx56Q9D0R4 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ddx56Q9D0R4 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ddx56Q9D0R4 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ddx56Q9D0R4 Gm7143-201ENSMUST00000222811 859 ntBASIC21.45■■□□□ 1.02
Ddx56Q9D0R4 Gm9959-201ENSMUST00000068277 390 ntBASIC21.45■■□□□ 1.02
Ddx56Q9D0R4 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Ddx56Q9D0R4 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ddx56Q9D0R4 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
Ddx56Q9D0R4 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ddx56Q9D0R4 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ddx56Q9D0R4 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Ddx56Q9D0R4 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ddx56Q9D0R4 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddx56Q9D0R4 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddx56Q9D0R4 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddx56Q9D0R4 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddx56Q9D0R4 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ddx56Q9D0R4 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Ddx56Q9D0R4 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddx56Q9D0R4 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddx56Q9D0R4 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddx56Q9D0R4 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ddx56Q9D0R4 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ddx56Q9D0R4 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddx56Q9D0R4 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC21.42■■□□□ 1.02
Ddx56Q9D0R4 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Ddx56Q9D0R4 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddx56Q9D0R4 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddx56Q9D0R4 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddx56Q9D0R4 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ddx56Q9D0R4 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Ddx56Q9D0R4 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Ddx56Q9D0R4 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ddx56Q9D0R4 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ddx56Q9D0R4 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ddx56Q9D0R4 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Ddx56Q9D0R4 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ddx56Q9D0R4 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC21.41■■□□□ 1.02
Ddx56Q9D0R4 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Ddx56Q9D0R4 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ddx56Q9D0R4 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ddx56Q9D0R4 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ddx56Q9D0R4 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ddx56Q9D0R4 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Ddx56Q9D0R4 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ddx56Q9D0R4 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddx56Q9D0R4 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
Ddx56Q9D0R4 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddx56Q9D0R4 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddx56Q9D0R4 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddx56Q9D0R4 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddx56Q9D0R4 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddx56Q9D0R4 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddx56Q9D0R4 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ddx56Q9D0R4 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
Ddx56Q9D0R4 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms