Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Use1Q9CQ56 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Use1Q9CQ56 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Use1Q9CQ56 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Use1Q9CQ56 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Use1Q9CQ56 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Use1Q9CQ56 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
Use1Q9CQ56 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Use1Q9CQ56 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.24■□□□□ 0.67
Use1Q9CQ56 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Use1Q9CQ56 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Use1Q9CQ56 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.23■□□□□ 0.67
Use1Q9CQ56 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
Use1Q9CQ56 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Use1Q9CQ56 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Use1Q9CQ56 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Use1Q9CQ56 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Use1Q9CQ56 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Use1Q9CQ56 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Use1Q9CQ56 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Use1Q9CQ56 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Use1Q9CQ56 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Use1Q9CQ56 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Use1Q9CQ56 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.22■□□□□ 0.67
Use1Q9CQ56 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Use1Q9CQ56 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Use1Q9CQ56 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.22■□□□□ 0.67
Use1Q9CQ56 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Use1Q9CQ56 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Use1Q9CQ56 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Use1Q9CQ56 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Use1Q9CQ56 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Use1Q9CQ56 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.21■□□□□ 0.67
Use1Q9CQ56 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
Use1Q9CQ56 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Use1Q9CQ56 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.21■□□□□ 0.67
Use1Q9CQ56 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Use1Q9CQ56 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Use1Q9CQ56 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Use1Q9CQ56 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Use1Q9CQ56 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
Use1Q9CQ56 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Use1Q9CQ56 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Use1Q9CQ56 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.19■□□□□ 0.66
Use1Q9CQ56 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Use1Q9CQ56 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Use1Q9CQ56 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC19.19■□□□□ 0.66
Use1Q9CQ56 Gm45444-201ENSMUST00000211394 898 ntBASIC19.19■□□□□ 0.66
Use1Q9CQ56 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Use1Q9CQ56 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Use1Q9CQ56 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Use1Q9CQ56 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Use1Q9CQ56 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Use1Q9CQ56 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Use1Q9CQ56 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Use1Q9CQ56 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC19.18■□□□□ 0.66
Use1Q9CQ56 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Use1Q9CQ56 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Use1Q9CQ56 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Use1Q9CQ56 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Use1Q9CQ56 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Use1Q9CQ56 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC19.18■□□□□ 0.66
Use1Q9CQ56 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Use1Q9CQ56 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Use1Q9CQ56 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.18■□□□□ 0.66
Use1Q9CQ56 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC19.18■□□□□ 0.66
Use1Q9CQ56 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Use1Q9CQ56 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Use1Q9CQ56 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Use1Q9CQ56 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Use1Q9CQ56 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Use1Q9CQ56 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Use1Q9CQ56 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Use1Q9CQ56 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Use1Q9CQ56 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Use1Q9CQ56 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Use1Q9CQ56 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Use1Q9CQ56 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Use1Q9CQ56 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Use1Q9CQ56 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Use1Q9CQ56 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Use1Q9CQ56 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Use1Q9CQ56 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC19.16■□□□□ 0.66
Use1Q9CQ56 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms