Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL12A1Q99715 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL12A1Q99715 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.25■□□□□ 0.83
COL12A1Q99715 AC245100.8-202ENST00000629247 1058 ntBASIC20.25■□□□□ 0.83
COL12A1Q99715 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.24■□□□□ 0.83
COL12A1Q99715 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL12A1Q99715 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL12A1Q99715 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.24■□□□□ 0.83
COL12A1Q99715 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.24■□□□□ 0.83
COL12A1Q99715 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL12A1Q99715 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL12A1Q99715 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.24■□□□□ 0.83
COL12A1Q99715 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.24■□□□□ 0.83
COL12A1Q99715 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL12A1Q99715 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
COL12A1Q99715 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL12A1Q99715 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
COL12A1Q99715 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL12A1Q99715 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL12A1Q99715 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL12A1Q99715 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.24■□□□□ 0.83
COL12A1Q99715 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL12A1Q99715 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL12A1Q99715 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL12A1Q99715 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.23■□□□□ 0.83
COL12A1Q99715 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.23■□□□□ 0.83
COL12A1Q99715 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL12A1Q99715 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.23■□□□□ 0.83
COL12A1Q99715 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL12A1Q99715 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL12A1Q99715 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.23■□□□□ 0.83
COL12A1Q99715 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.23■□□□□ 0.83
COL12A1Q99715 AC016769.1-201ENST00000409132 1010 ntBASIC20.23■□□□□ 0.83
COL12A1Q99715 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.23■□□□□ 0.83
COL12A1Q99715 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.23■□□□□ 0.83
COL12A1Q99715 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.23■□□□□ 0.83
COL12A1Q99715 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL12A1Q99715 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL12A1Q99715 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.22■□□□□ 0.83
COL12A1Q99715 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.22■□□□□ 0.83
COL12A1Q99715 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL12A1Q99715 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL12A1Q99715 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
COL12A1Q99715 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL12A1Q99715 AL109923.1-201ENST00000618799 583 ntBASIC20.21■□□□□ 0.83
COL12A1Q99715 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL12A1Q99715 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL12A1Q99715 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL12A1Q99715 AC092171.4-201ENST00000609130 632 ntBASIC20.21■□□□□ 0.83
COL12A1Q99715 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
COL12A1Q99715 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL12A1Q99715 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL12A1Q99715 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL12A1Q99715 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.21■□□□□ 0.83
COL12A1Q99715 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.2■□□□□ 0.82
COL12A1Q99715 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL12A1Q99715 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL12A1Q99715 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.19■□□□□ 0.82
COL12A1Q99715 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL12A1Q99715 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL12A1Q99715 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.19■□□□□ 0.82
COL12A1Q99715 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.19■□□□□ 0.82
COL12A1Q99715 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
COL12A1Q99715 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL12A1Q99715 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL12A1Q99715 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL12A1Q99715 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.18■□□□□ 0.82
COL12A1Q99715 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.18■□□□□ 0.82
COL12A1Q99715 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.18■□□□□ 0.82
COL12A1Q99715 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL12A1Q99715 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL12A1Q99715 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL12A1Q99715 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL12A1Q99715 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.17■□□□□ 0.82
COL12A1Q99715 BX842568.3-201ENST00000418104 571 ntBASIC20.17■□□□□ 0.82
COL12A1Q99715 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
COL12A1Q99715 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL12A1Q99715 AP004609.3-201ENST00000610705 1884 ntBASIC20.17■□□□□ 0.82
COL12A1Q99715 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.17■□□□□ 0.82
COL12A1Q99715 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL12A1Q99715 SHF-206ENST00000560471 2499 ntTSL 5 BASIC20.17■□□□□ 0.82
COL12A1Q99715 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL12A1Q99715 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL12A1Q99715 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.16■□□□□ 0.82
COL12A1Q99715 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.16■□□□□ 0.82
COL12A1Q99715 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL12A1Q99715 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL12A1Q99715 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL12A1Q99715 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL12A1Q99715 GUSBP6-202ENST00000438529 1198 ntBASIC20.16■□□□□ 0.82
COL12A1Q99715 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.16■□□□□ 0.82
COL12A1Q99715 MIR6084-201ENST00000622012 110 ntBASIC20.16■□□□□ 0.82
COL12A1Q99715 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
COL12A1Q99715 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.15■□□□□ 0.82
COL12A1Q99715 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL12A1Q99715 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
COL12A1Q99715 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.15■□□□□ 0.82
COL12A1Q99715 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.15■□□□□ 0.82
COL12A1Q99715 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL12A1Q99715 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms