Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Cdh11P55288 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cdh11P55288 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cdh11P55288 Gm14117-201ENSMUST00000122417 843 ntBASIC18.5■□□□□ 0.55
Cdh11P55288 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cdh11P55288 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cdh11P55288 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Cdh11P55288 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.49■□□□□ 0.55
Cdh11P55288 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Cdh11P55288 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
Cdh11P55288 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cdh11P55288 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cdh11P55288 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cdh11P55288 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Cdh11P55288 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC18.49■□□□□ 0.55
Cdh11P55288 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC18.49■□□□□ 0.55
Cdh11P55288 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Cdh11P55288 Gm45102-201ENSMUST00000207427 857 ntBASIC18.49■□□□□ 0.55
Cdh11P55288 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cdh11P55288 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.49■□□□□ 0.55
Cdh11P55288 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
Cdh11P55288 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdh11P55288 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdh11P55288 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Cdh11P55288 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdh11P55288 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Cdh11P55288 Gm9959-201ENSMUST00000068277 390 ntBASIC18.48■□□□□ 0.55
Cdh11P55288 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdh11P55288 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Cdh11P55288 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Cdh11P55288 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdh11P55288 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cdh11P55288 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Cdh11P55288 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdh11P55288 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdh11P55288 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdh11P55288 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdh11P55288 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdh11P55288 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdh11P55288 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cdh11P55288 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdh11P55288 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Cdh11P55288 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdh11P55288 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Cdh11P55288 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdh11P55288 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.46■□□□□ 0.55
Cdh11P55288 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Cdh11P55288 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdh11P55288 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Cdh11P55288 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdh11P55288 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cdh11P55288 Gm10616-201ENSMUST00000205285 2127 ntBASIC18.46■□□□□ 0.55
Cdh11P55288 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cdh11P55288 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cdh11P55288 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cdh11P55288 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cdh11P55288 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.45■□□□□ 0.54
Cdh11P55288 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cdh11P55288 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Cdh11P55288 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Cdh11P55288 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdh11P55288 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdh11P55288 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdh11P55288 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdh11P55288 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.44■□□□□ 0.54
Cdh11P55288 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdh11P55288 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Cdh11P55288 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.44■□□□□ 0.54
Cdh11P55288 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdh11P55288 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Cdh11P55288 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdh11P55288 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdh11P55288 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdh11P55288 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cdh11P55288 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Cdh11P55288 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdh11P55288 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdh11P55288 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdh11P55288 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cdh11P55288 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdh11P55288 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.43■□□□□ 0.54
Cdh11P55288 Etf1-202ENSMUST00000180351 108 ntBASIC18.43■□□□□ 0.54
Cdh11P55288 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC18.43■□□□□ 0.54
Cdh11P55288 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC18.43■□□□□ 0.54
Cdh11P55288 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.43■□□□□ 0.54
Cdh11P55288 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdh11P55288 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cdh11P55288 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdh11P55288 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdh11P55288 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Cdh11P55288 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Cdh11P55288 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Cdh11P55288 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Cdh11P55288 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdh11P55288 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdh11P55288 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.42■□□□□ 0.54
Cdh11P55288 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdh11P55288 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cdh11P55288 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cdh11P55288 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 144.6 ms