Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx56Q9D0R4 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx56Q9D0R4 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx56Q9D0R4 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx56Q9D0R4 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx56Q9D0R4 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx56Q9D0R4 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Ddx56Q9D0R4 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Ddx56Q9D0R4 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx56Q9D0R4 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx56Q9D0R4 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx56Q9D0R4 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Ddx56Q9D0R4 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ddx56Q9D0R4 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC21.61■■□□□ 1.05
Ddx56Q9D0R4 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ddx56Q9D0R4 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ddx56Q9D0R4 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
Ddx56Q9D0R4 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ddx56Q9D0R4 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ddx56Q9D0R4 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC21.6■■□□□ 1.05
Ddx56Q9D0R4 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Ddx56Q9D0R4 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddx56Q9D0R4 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddx56Q9D0R4 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Ddx56Q9D0R4 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddx56Q9D0R4 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC21.59■■□□□ 1.05
Ddx56Q9D0R4 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddx56Q9D0R4 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddx56Q9D0R4 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddx56Q9D0R4 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddx56Q9D0R4 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddx56Q9D0R4 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ddx56Q9D0R4 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ddx56Q9D0R4 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ddx56Q9D0R4 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC21.58■■□□□ 1.04
Ddx56Q9D0R4 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ddx56Q9D0R4 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 AC122428.2-201ENSMUST00000216321 1832 ntBASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx56Q9D0R4 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Ddx56Q9D0R4 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx56Q9D0R4 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx56Q9D0R4 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx56Q9D0R4 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx56Q9D0R4 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC21.55■■□□□ 1.04
Ddx56Q9D0R4 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Ddx56Q9D0R4 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddx56Q9D0R4 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddx56Q9D0R4 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC21.55■■□□□ 1.04
Ddx56Q9D0R4 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddx56Q9D0R4 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Ddx56Q9D0R4 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx56Q9D0R4 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx56Q9D0R4 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx56Q9D0R4 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC21.54■■□□□ 1.04
Ddx56Q9D0R4 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC21.54■■□□□ 1.04
Ddx56Q9D0R4 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx56Q9D0R4 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx56Q9D0R4 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx56Q9D0R4 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx56Q9D0R4 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx56Q9D0R4 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Ddx56Q9D0R4 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Ddx56Q9D0R4 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddx56Q9D0R4 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC21.53■■□□□ 1.04
Ddx56Q9D0R4 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC21.53■■□□□ 1.04
Ddx56Q9D0R4 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddx56Q9D0R4 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
Ddx56Q9D0R4 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx56Q9D0R4 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx56Q9D0R4 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx56Q9D0R4 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx56Q9D0R4 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx56Q9D0R4 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx56Q9D0R4 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx56Q9D0R4 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Ddx56Q9D0R4 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC21.52■■□□□ 1.03
Ddx56Q9D0R4 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Ddx56Q9D0R4 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Ddx56Q9D0R4 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Ddx56Q9D0R4 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddx56Q9D0R4 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Ddx56Q9D0R4 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.51■■□□□ 1.03
Ddx56Q9D0R4 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Ddx56Q9D0R4 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ddx56Q9D0R4 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Ddx56Q9D0R4 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms