Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL12A1Q99715 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL12A1Q99715 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.34■□□□□ 0.85
COL12A1Q99715 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.34■□□□□ 0.85
COL12A1Q99715 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.34■□□□□ 0.85
COL12A1Q99715 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.34■□□□□ 0.85
COL12A1Q99715 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.34■□□□□ 0.85
COL12A1Q99715 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL12A1Q99715 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL12A1Q99715 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
COL12A1Q99715 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
COL12A1Q99715 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL12A1Q99715 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
COL12A1Q99715 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL12A1Q99715 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.33■□□□□ 0.84
COL12A1Q99715 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.33■□□□□ 0.84
COL12A1Q99715 DRD5P2-201ENST00000421395 2012 ntBASIC20.33■□□□□ 0.84
COL12A1Q99715 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL12A1Q99715 MIR4651-201ENST00000582622 73 ntBASIC20.33■□□□□ 0.84
COL12A1Q99715 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
COL12A1Q99715 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL12A1Q99715 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL12A1Q99715 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.32■□□□□ 0.84
COL12A1Q99715 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.32■□□□□ 0.84
COL12A1Q99715 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
COL12A1Q99715 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.32■□□□□ 0.84
COL12A1Q99715 AC073111.5-205ENST00000641717 521 ntBASIC20.32■□□□□ 0.84
COL12A1Q99715 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL12A1Q99715 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.31■□□□□ 0.84
COL12A1Q99715 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL12A1Q99715 CD99P1-205ENST00000527459 561 ntBASIC20.31■□□□□ 0.84
COL12A1Q99715 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.31■□□□□ 0.84
COL12A1Q99715 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.31■□□□□ 0.84
COL12A1Q99715 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL12A1Q99715 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL12A1Q99715 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.31■□□□□ 0.84
COL12A1Q99715 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
COL12A1Q99715 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.31■□□□□ 0.84
COL12A1Q99715 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.31■□□□□ 0.84
COL12A1Q99715 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL12A1Q99715 AC142086.2-201ENST00000569753 217 ntBASIC20.3■□□□□ 0.84
COL12A1Q99715 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.3■□□□□ 0.84
COL12A1Q99715 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.3■□□□□ 0.84
COL12A1Q99715 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.3■□□□□ 0.84
COL12A1Q99715 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.3■□□□□ 0.84
COL12A1Q99715 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC20.3■□□□□ 0.84
COL12A1Q99715 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.3■□□□□ 0.84
COL12A1Q99715 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL12A1Q99715 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL12A1Q99715 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL12A1Q99715 KRT18P61-201ENST00000585825 1298 ntBASIC20.3■□□□□ 0.84
COL12A1Q99715 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.3■□□□□ 0.84
COL12A1Q99715 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.3■□□□□ 0.84
COL12A1Q99715 AC080038.1-201ENST00000611274 1154 ntBASIC20.3■□□□□ 0.84
COL12A1Q99715 AC241377.3-202ENST00000626088 1088 ntBASIC20.3■□□□□ 0.84
COL12A1Q99715 AC241585.3-202ENST00000628937 1088 ntBASIC20.3■□□□□ 0.84
COL12A1Q99715 AC090877.2-201ENST00000558441 1738 ntBASIC20.29■□□□□ 0.84
COL12A1Q99715 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.29■□□□□ 0.84
COL12A1Q99715 AC009102.2-201ENST00000606772 1639 ntBASIC20.29■□□□□ 0.84
COL12A1Q99715 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL12A1Q99715 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL12A1Q99715 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.29■□□□□ 0.84
COL12A1Q99715 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL12A1Q99715 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL12A1Q99715 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL12A1Q99715 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
COL12A1Q99715 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
COL12A1Q99715 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
COL12A1Q99715 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL12A1Q99715 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL12A1Q99715 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL12A1Q99715 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
COL12A1Q99715 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.28■□□□□ 0.84
COL12A1Q99715 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.28■□□□□ 0.84
COL12A1Q99715 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL12A1Q99715 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL12A1Q99715 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.28■□□□□ 0.84
COL12A1Q99715 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL12A1Q99715 MIR3181-201ENST00000578512 73 ntBASIC20.27■□□□□ 0.84
COL12A1Q99715 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
COL12A1Q99715 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.27■□□□□ 0.84
COL12A1Q99715 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
COL12A1Q99715 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL12A1Q99715 AC006455.2-201ENST00000429931 906 ntBASIC20.27■□□□□ 0.84
COL12A1Q99715 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL12A1Q99715 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
COL12A1Q99715 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.26■□□□□ 0.83
COL12A1Q99715 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.26■□□□□ 0.83
COL12A1Q99715 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL12A1Q99715 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL12A1Q99715 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.26■□□□□ 0.83
COL12A1Q99715 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL12A1Q99715 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL12A1Q99715 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL12A1Q99715 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL12A1Q99715 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.25■□□□□ 0.83
COL12A1Q99715 KRT18P6-201ENST00000555540 1265 ntBASIC20.25■□□□□ 0.83
COL12A1Q99715 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL12A1Q99715 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.25■□□□□ 0.83
COL12A1Q99715 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms