Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.73■□□□□ 0.91
Sh3rf1Q69ZI1 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sh3rf1Q69ZI1 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
Sh3rf1Q69ZI1 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sh3rf1Q69ZI1 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Sh3rf1Q69ZI1 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sh3rf1Q69ZI1 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Sh3rf1Q69ZI1 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sh3rf1Q69ZI1 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sh3rf1Q69ZI1 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sh3rf1Q69ZI1 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Sh3rf1Q69ZI1 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sh3rf1Q69ZI1 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sh3rf1Q69ZI1 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Sh3rf1Q69ZI1 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.72■□□□□ 0.91
Sh3rf1Q69ZI1 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Sh3rf1Q69ZI1 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sh3rf1Q69ZI1 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Sh3rf1Q69ZI1 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sh3rf1Q69ZI1 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Sh3rf1Q69ZI1 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sh3rf1Q69ZI1 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sh3rf1Q69ZI1 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sh3rf1Q69ZI1 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Sh3rf1Q69ZI1 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sh3rf1Q69ZI1 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Sh3rf1Q69ZI1 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
Sh3rf1Q69ZI1 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Sh3rf1Q69ZI1 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sh3rf1Q69ZI1 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sh3rf1Q69ZI1 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sh3rf1Q69ZI1 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Sh3rf1Q69ZI1 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sh3rf1Q69ZI1 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sh3rf1Q69ZI1 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sh3rf1Q69ZI1 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 AC164883.3-201ENSMUST00000227396 1774 ntBASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sh3rf1Q69ZI1 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf1Q69ZI1 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf1Q69ZI1 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf1Q69ZI1 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf1Q69ZI1 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
Sh3rf1Q69ZI1 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Sh3rf1Q69ZI1 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.68■□□□□ 0.9
Sh3rf1Q69ZI1 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf1Q69ZI1 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf1Q69ZI1 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf1Q69ZI1 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Sh3rf1Q69ZI1 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sh3rf1Q69ZI1 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sh3rf1Q69ZI1 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sh3rf1Q69ZI1 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Sh3rf1Q69ZI1 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
Sh3rf1Q69ZI1 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Sh3rf1Q69ZI1 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sh3rf1Q69ZI1 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Sh3rf1Q69ZI1 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.67■□□□□ 0.9
Sh3rf1Q69ZI1 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sh3rf1Q69ZI1 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Sh3rf1Q69ZI1 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sh3rf1Q69ZI1 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.67■□□□□ 0.9
Sh3rf1Q69ZI1 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sh3rf1Q69ZI1 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sh3rf1Q69ZI1 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.65■□□□□ 0.9
Sh3rf1Q69ZI1 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sh3rf1Q69ZI1 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sh3rf1Q69ZI1 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sh3rf1Q69ZI1 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Sh3rf1Q69ZI1 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Sh3rf1Q69ZI1 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sh3rf1Q69ZI1 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Sh3rf1Q69ZI1 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Sh3rf1Q69ZI1 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 8.3 ms