Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CNOT4O95628 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CNOT4O95628 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CNOT4O95628 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.24■□□□□ 0.83
CNOT4O95628 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNOT4O95628 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.24■□□□□ 0.83
CNOT4O95628 MIR3621-201ENST00000580529 85 ntBASIC20.24■□□□□ 0.83
CNOT4O95628 AL356740.2-201ENST00000601559 647 ntBASIC20.24■□□□□ 0.83
CNOT4O95628 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.24■□□□□ 0.83
CNOT4O95628 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CNOT4O95628 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNOT4O95628 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CNOT4O95628 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CNOT4O95628 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.24■□□□□ 0.83
CNOT4O95628 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.24■□□□□ 0.83
CNOT4O95628 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNOT4O95628 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CNOT4O95628 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CNOT4O95628 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNOT4O95628 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNOT4O95628 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNOT4O95628 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNOT4O95628 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.23■□□□□ 0.83
CNOT4O95628 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.23■□□□□ 0.83
CNOT4O95628 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNOT4O95628 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.23■□□□□ 0.83
CNOT4O95628 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNOT4O95628 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CNOT4O95628 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CNOT4O95628 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CNOT4O95628 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
CNOT4O95628 AL117332.1-201ENST00000622628 974 ntBASIC20.22■□□□□ 0.83
CNOT4O95628 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.22■□□□□ 0.83
CNOT4O95628 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CNOT4O95628 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.22■□□□□ 0.83
CNOT4O95628 AC005703.6-201ENST00000623265 1329 ntBASIC20.22■□□□□ 0.83
CNOT4O95628 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CNOT4O95628 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CNOT4O95628 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CNOT4O95628 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CNOT4O95628 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CNOT4O95628 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.21■□□□□ 0.83
CNOT4O95628 AC138932.3-201ENST00000567634 1902 ntBASIC20.21■□□□□ 0.83
CNOT4O95628 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CNOT4O95628 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CNOT4O95628 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CNOT4O95628 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CNOT4O95628 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CNOT4O95628 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.2■□□□□ 0.82
CNOT4O95628 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.2■□□□□ 0.82
CNOT4O95628 AL139246.5-201ENST00000606645 996 ntBASIC20.2■□□□□ 0.82
CNOT4O95628 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CNOT4O95628 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CNOT4O95628 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.2■□□□□ 0.82
CNOT4O95628 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.2■□□□□ 0.82
CNOT4O95628 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CNOT4O95628 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CNOT4O95628 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CNOT4O95628 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.19■□□□□ 0.82
CNOT4O95628 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CNOT4O95628 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CNOT4O95628 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.19■□□□□ 0.82
CNOT4O95628 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
CNOT4O95628 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CNOT4O95628 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CNOT4O95628 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CNOT4O95628 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CNOT4O95628 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CNOT4O95628 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.18■□□□□ 0.82
CNOT4O95628 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.18■□□□□ 0.82
CNOT4O95628 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.18■□□□□ 0.82
CNOT4O95628 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.18■□□□□ 0.82
CNOT4O95628 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.18■□□□□ 0.82
CNOT4O95628 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CNOT4O95628 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CNOT4O95628 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CNOT4O95628 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CNOT4O95628 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CNOT4O95628 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CNOT4O95628 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CNOT4O95628 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CNOT4O95628 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CNOT4O95628 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CNOT4O95628 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CNOT4O95628 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
CNOT4O95628 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CNOT4O95628 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CNOT4O95628 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.17■□□□□ 0.82
CNOT4O95628 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.17■□□□□ 0.82
CNOT4O95628 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CNOT4O95628 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.17■□□□□ 0.82
CNOT4O95628 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CNOT4O95628 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CNOT4O95628 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CNOT4O95628 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.16■□□□□ 0.82
CNOT4O95628 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.16■□□□□ 0.82
CNOT4O95628 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.16■□□□□ 0.82
CNOT4O95628 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CNOT4O95628 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.16■□□□□ 0.82
CNOT4O95628 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms