Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC30.74■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 MTX2-204ENST00000443241 799 ntTSL 3 BASIC30.74■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 AC005837.3-201ENST00000612163 286 ntBASIC30.74■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC30.73■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC30.73■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC30.73■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC30.72■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 RNF146-205ENST00000477776 762 ntTSL 3 BASIC30.72■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC30.71■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 AC103724.3-201ENST00000564481 992 ntBASIC30.71■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC30.71■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 SHD-204ENST00000599689 1729 ntTSL 5 BASIC30.7■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC30.7■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC30.7■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 CREM-229ENST00000474362 1030 ntTSL 2 BASIC30.7■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC30.7■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC30.7■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC30.69■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 C9orf163-202ENST00000624034 2573 ntBASIC30.69■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 MIR4508-201ENST00000584178 70 ntBASIC30.68■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 AC019171.1-201ENST00000601251 1056 ntBASIC30.68■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 MIR5787-201ENST00000611784 55 ntBASIC30.68■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 GAK-223ENST00000628912 497 ntTSL 5 BASIC30.68■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC30.68■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 AC026271.2-201ENST00000428091 497 ntBASIC30.67■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC30.67■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC30.67■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC30.67■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC30.66■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC30.66■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC30.66■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC30.66■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC30.66■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC30.65■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC30.64■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SENP3-EIF4A1A0A087X0R7 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC30.63■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC30.63■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC30.63■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC30.63■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC30.62■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC30.61■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.61■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC30.61■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC30.6■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 MIR4281-201ENST00000580852 62 ntBASIC30.6■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
SENP3-EIF4A1A0A087X0R7 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC30.6■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms