Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Nkx2-4Q9EQM3 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Nkx2-4Q9EQM3 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Nkx2-4Q9EQM3 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Nkx2-4Q9EQM3 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Nkx2-4Q9EQM3 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Nkx2-4Q9EQM3 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Nkx2-4Q9EQM3 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Nkx2-4Q9EQM3 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Nkx2-4Q9EQM3 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Nkx2-4Q9EQM3 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Nkx2-4Q9EQM3 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Nkx2-4Q9EQM3 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Nkx2-4Q9EQM3 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Nkx2-4Q9EQM3 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Nkx2-4Q9EQM3 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC21.47■■□□□ 1.03
Nkx2-4Q9EQM3 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Nkx2-4Q9EQM3 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Nkx2-4Q9EQM3 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC21.46■■□□□ 1.03
Nkx2-4Q9EQM3 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC21.46■■□□□ 1.03
Nkx2-4Q9EQM3 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC21.46■■□□□ 1.03
Nkx2-4Q9EQM3 AV356131-201ENSMUST00000206201 750 ntBASIC21.46■■□□□ 1.03
Nkx2-4Q9EQM3 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Nkx2-4Q9EQM3 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Nkx2-4Q9EQM3 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Nkx2-4Q9EQM3 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Nkx2-4Q9EQM3 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Nkx2-4Q9EQM3 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.46■■□□□ 1.03
Nkx2-4Q9EQM3 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.45■■□□□ 1.02
Nkx2-4Q9EQM3 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Nkx2-4Q9EQM3 Gm12669-201ENSMUST00000122162 1009 ntBASIC21.45■■□□□ 1.02
Nkx2-4Q9EQM3 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Nkx2-4Q9EQM3 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Nkx2-4Q9EQM3 Gm10033-202ENSMUST00000211874 928 ntBASIC21.44■■□□□ 1.02
Nkx2-4Q9EQM3 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Nkx2-4Q9EQM3 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Nkx2-4Q9EQM3 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Nkx2-4Q9EQM3 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Nkx2-4Q9EQM3 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Nkx2-4Q9EQM3 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Nkx2-4Q9EQM3 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Nkx2-4Q9EQM3 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Nkx2-4Q9EQM3 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Nkx2-4Q9EQM3 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Nkx2-4Q9EQM3 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Nkx2-4Q9EQM3 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx2-4Q9EQM3 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC21.42■■□□□ 1.02
Nkx2-4Q9EQM3 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx2-4Q9EQM3 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx2-4Q9EQM3 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx2-4Q9EQM3 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx2-4Q9EQM3 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx2-4Q9EQM3 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx2-4Q9EQM3 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx2-4Q9EQM3 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Nkx2-4Q9EQM3 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx2-4Q9EQM3 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Nkx2-4Q9EQM3 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Nkx2-4Q9EQM3 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC21.41■■□□□ 1.02
Nkx2-4Q9EQM3 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Nkx2-4Q9EQM3 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.41■■□□□ 1.02
Nkx2-4Q9EQM3 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Nkx2-4Q9EQM3 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Nkx2-4Q9EQM3 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Nkx2-4Q9EQM3 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Nkx2-4Q9EQM3 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Nkx2-4Q9EQM3 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
Nkx2-4Q9EQM3 Smad6-203ENSMUST00000179458 273 ntBASIC21.4■■□□□ 1.02
Nkx2-4Q9EQM3 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC21.4■■□□□ 1.02
Nkx2-4Q9EQM3 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Nkx2-4Q9EQM3 Gm10602-201ENSMUST00000098239 609 ntBASIC21.4■■□□□ 1.02
Nkx2-4Q9EQM3 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Nkx2-4Q9EQM3 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Nkx2-4Q9EQM3 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Nkx2-4Q9EQM3 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Nkx2-4Q9EQM3 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Nkx2-4Q9EQM3 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Nkx2-4Q9EQM3 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Nkx2-4Q9EQM3 Gm42778-201ENSMUST00000199644 553 ntBASIC21.39■■□□□ 1.01
Nkx2-4Q9EQM3 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC21.39■■□□□ 1.01
Nkx2-4Q9EQM3 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Nkx2-4Q9EQM3 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Nkx2-4Q9EQM3 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.39■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms