Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Shkbp1Q6P7W2 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC21.71■■□□□ 1.07
Shkbp1Q6P7W2 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.71■■□□□ 1.07
Shkbp1Q6P7W2 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Shkbp1Q6P7W2 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Shkbp1Q6P7W2 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.71■■□□□ 1.07
Shkbp1Q6P7W2 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Shkbp1Q6P7W2 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Shkbp1Q6P7W2 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Shkbp1Q6P7W2 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Shkbp1Q6P7W2 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Shkbp1Q6P7W2 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Shkbp1Q6P7W2 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Shkbp1Q6P7W2 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Shkbp1Q6P7W2 Gm43017-201ENSMUST00000198296 752 ntBASIC21.7■■□□□ 1.06
Shkbp1Q6P7W2 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Shkbp1Q6P7W2 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.7■■□□□ 1.06
Shkbp1Q6P7W2 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Shkbp1Q6P7W2 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Shkbp1Q6P7W2 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Shkbp1Q6P7W2 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC21.69■■□□□ 1.06
Shkbp1Q6P7W2 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Shkbp1Q6P7W2 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Shkbp1Q6P7W2 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Shkbp1Q6P7W2 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC21.69■■□□□ 1.06
Shkbp1Q6P7W2 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
Shkbp1Q6P7W2 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Shkbp1Q6P7W2 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Shkbp1Q6P7W2 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
Shkbp1Q6P7W2 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Shkbp1Q6P7W2 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Shkbp1Q6P7W2 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
Shkbp1Q6P7W2 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.68■■□□□ 1.06
Shkbp1Q6P7W2 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Shkbp1Q6P7W2 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Shkbp1Q6P7W2 AC164883.3-201ENSMUST00000227396 1774 ntBASIC21.68■■□□□ 1.06
Shkbp1Q6P7W2 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Shkbp1Q6P7W2 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Shkbp1Q6P7W2 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Shkbp1Q6P7W2 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC21.67■■□□□ 1.06
Shkbp1Q6P7W2 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Shkbp1Q6P7W2 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.67■■□□□ 1.06
Shkbp1Q6P7W2 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Shkbp1Q6P7W2 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Shkbp1Q6P7W2 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
Shkbp1Q6P7W2 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.66■■□□□ 1.06
Shkbp1Q6P7W2 Gm8493-201ENSMUST00000196881 489 ntBASIC21.66■■□□□ 1.06
Shkbp1Q6P7W2 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.66■■□□□ 1.06
Shkbp1Q6P7W2 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Shkbp1Q6P7W2 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Shkbp1Q6P7W2 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Shkbp1Q6P7W2 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Shkbp1Q6P7W2 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Shkbp1Q6P7W2 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.65■■□□□ 1.06
Shkbp1Q6P7W2 Gm43530-201ENSMUST00000195920 274 ntBASIC21.65■■□□□ 1.06
Shkbp1Q6P7W2 Gm21168-201ENSMUST00000199646 1096 ntBASIC21.65■■□□□ 1.06
Shkbp1Q6P7W2 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Shkbp1Q6P7W2 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.65■■□□□ 1.06
Shkbp1Q6P7W2 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Shkbp1Q6P7W2 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Shkbp1Q6P7W2 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC21.64■■□□□ 1.06
Shkbp1Q6P7W2 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.64■■□□□ 1.06
Shkbp1Q6P7W2 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC21.64■■□□□ 1.06
Shkbp1Q6P7W2 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Shkbp1Q6P7W2 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
Shkbp1Q6P7W2 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Shkbp1Q6P7W2 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Gm12251-201ENSMUST00000117893 792 ntBASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Shkbp1Q6P7W2 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Shkbp1Q6P7W2 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Shkbp1Q6P7W2 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Shkbp1Q6P7W2 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC21.62■■□□□ 1.05
Shkbp1Q6P7W2 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Shkbp1Q6P7W2 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 111 ms