Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps28Q9D1C8 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps28Q9D1C8 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Vps28Q9D1C8 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps28Q9D1C8 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Vps28Q9D1C8 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Vps28Q9D1C8 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Vps28Q9D1C8 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC21.28■■□□□ 1
Vps28Q9D1C8 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC21.28■■□□□ 1
Vps28Q9D1C8 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC21.28■■□□□ 1
Vps28Q9D1C8 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.28■■□□□ 1
Vps28Q9D1C8 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Vps28Q9D1C8 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Vps28Q9D1C8 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.27■■□□□ 1
Vps28Q9D1C8 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
Vps28Q9D1C8 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vps28Q9D1C8 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.27■■□□□ 1
Vps28Q9D1C8 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC21.27■■□□□ 1
Vps28Q9D1C8 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vps28Q9D1C8 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.27■■□□□ 1
Vps28Q9D1C8 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Vps28Q9D1C8 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Vps28Q9D1C8 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps28Q9D1C8 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Vps28Q9D1C8 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC21.26■□□□□ 0.99
Vps28Q9D1C8 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps28Q9D1C8 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps28Q9D1C8 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Vps28Q9D1C8 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps28Q9D1C8 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Vps28Q9D1C8 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.26■□□□□ 0.99
Vps28Q9D1C8 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps28Q9D1C8 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps28Q9D1C8 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps28Q9D1C8 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC21.25■□□□□ 0.99
Vps28Q9D1C8 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC21.25■□□□□ 0.99
Vps28Q9D1C8 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Vps28Q9D1C8 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps28Q9D1C8 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps28Q9D1C8 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps28Q9D1C8 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Vps28Q9D1C8 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Vps28Q9D1C8 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Vps28Q9D1C8 Gm32051-202ENSMUST00000197905 2385 ntBASIC21.24■□□□□ 0.99
Vps28Q9D1C8 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vps28Q9D1C8 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Vps28Q9D1C8 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vps28Q9D1C8 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.24■□□□□ 0.99
Vps28Q9D1C8 Gm22238-201ENSMUST00000175222 88 ntBASIC21.24■□□□□ 0.99
Vps28Q9D1C8 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vps28Q9D1C8 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Vps28Q9D1C8 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vps28Q9D1C8 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Vps28Q9D1C8 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC21.23■□□□□ 0.99
Vps28Q9D1C8 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC21.23■□□□□ 0.99
Vps28Q9D1C8 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC21.23■□□□□ 0.99
Vps28Q9D1C8 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Vps28Q9D1C8 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Vps28Q9D1C8 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Vps28Q9D1C8 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Vps28Q9D1C8 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Vps28Q9D1C8 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Vps28Q9D1C8 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
Vps28Q9D1C8 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps28Q9D1C8 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Vps28Q9D1C8 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps28Q9D1C8 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
Vps28Q9D1C8 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps28Q9D1C8 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps28Q9D1C8 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps28Q9D1C8 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Vps28Q9D1C8 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps28Q9D1C8 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Vps28Q9D1C8 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC21.21■□□□□ 0.99
Vps28Q9D1C8 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Vps28Q9D1C8 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC21.21■□□□□ 0.99
Vps28Q9D1C8 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps28Q9D1C8 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps28Q9D1C8 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Vps28Q9D1C8 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC21.2■□□□□ 0.98
Vps28Q9D1C8 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Vps28Q9D1C8 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Vps28Q9D1C8 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
Vps28Q9D1C8 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Vps28Q9D1C8 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Vps28Q9D1C8 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Vps28Q9D1C8 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Vps28Q9D1C8 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Vps28Q9D1C8 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Vps28Q9D1C8 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Vps28Q9D1C8 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Vps28Q9D1C8 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Vps28Q9D1C8 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC21.18■□□□□ 0.98
Vps28Q9D1C8 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.18■□□□□ 0.98
Vps28Q9D1C8 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Vps28Q9D1C8 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Vps28Q9D1C8 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Vps28Q9D1C8 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Vps28Q9D1C8 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Vps28Q9D1C8 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms