Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNF126P1-201ENST00000567452 1320 ntBASIC20.05■□□□□ 0.8
NKX3-1Q99801 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX3-1Q99801 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NKX3-1Q99801 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX3-1Q99801 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX3-1Q99801 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
NKX3-1Q99801 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX3-1Q99801 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NKX3-1Q99801 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.04■□□□□ 0.8
NKX3-1Q99801 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX3-1Q99801 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
NKX3-1Q99801 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.04■□□□□ 0.8
NKX3-1Q99801 RAP2CP1-202ENST00000605179 643 ntBASIC20.04■□□□□ 0.8
NKX3-1Q99801 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NKX3-1Q99801 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX3-1Q99801 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NKX3-1Q99801 AC012676.1-201ENST00000574705 1949 ntBASIC20.04■□□□□ 0.8
NKX3-1Q99801 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX3-1Q99801 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX3-1Q99801 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.03■□□□□ 0.8
NKX3-1Q99801 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX3-1Q99801 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX3-1Q99801 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.03■□□□□ 0.8
NKX3-1Q99801 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.03■□□□□ 0.8
NKX3-1Q99801 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.03■□□□□ 0.8
NKX3-1Q99801 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX3-1Q99801 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX3-1Q99801 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX3-1Q99801 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
NKX3-1Q99801 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
NKX3-1Q99801 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NKX3-1Q99801 AC026202.3-201ENST00000600805 1127 ntBASIC20.02■□□□□ 0.8
NKX3-1Q99801 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.02■□□□□ 0.8
NKX3-1Q99801 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
NKX3-1Q99801 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.02■□□□□ 0.8
NKX3-1Q99801 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
NKX3-1Q99801 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
NKX3-1Q99801 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
NKX3-1Q99801 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NKX3-1Q99801 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NKX3-1Q99801 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
NKX3-1Q99801 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
NKX3-1Q99801 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
NKX3-1Q99801 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.01■□□□□ 0.79
NKX3-1Q99801 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NKX3-1Q99801 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20■□□□□ 0.79
NKX3-1Q99801 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20■□□□□ 0.79
NKX3-1Q99801 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20■□□□□ 0.79
NKX3-1Q99801 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20■□□□□ 0.79
NKX3-1Q99801 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NKX3-1Q99801 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NKX3-1Q99801 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NKX3-1Q99801 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NKX3-1Q99801 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NKX3-1Q99801 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.99■□□□□ 0.79
NKX3-1Q99801 ABHD17AP5-201ENST00000580133 923 ntBASIC19.99■□□□□ 0.79
NKX3-1Q99801 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NKX3-1Q99801 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NKX3-1Q99801 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NKX3-1Q99801 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
NKX3-1Q99801 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
NKX3-1Q99801 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.99■□□□□ 0.79
NKX3-1Q99801 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NKX3-1Q99801 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.99■□□□□ 0.79
NKX3-1Q99801 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.99■□□□□ 0.79
NKX3-1Q99801 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NKX3-1Q99801 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NKX3-1Q99801 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.98■□□□□ 0.79
NKX3-1Q99801 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NKX3-1Q99801 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
NKX3-1Q99801 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NKX3-1Q99801 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
NKX3-1Q99801 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
NKX3-1Q99801 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.98■□□□□ 0.79
NKX3-1Q99801 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.98■□□□□ 0.79
NKX3-1Q99801 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
NKX3-1Q99801 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NKX3-1Q99801 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NKX3-1Q99801 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.97■□□□□ 0.79
NKX3-1Q99801 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NKX3-1Q99801 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.97■□□□□ 0.79
NKX3-1Q99801 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.97■□□□□ 0.79
NKX3-1Q99801 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
NKX3-1Q99801 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NKX3-1Q99801 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NKX3-1Q99801 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NKX3-1Q99801 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NKX3-1Q99801 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.96■□□□□ 0.79
NKX3-1Q99801 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NKX3-1Q99801 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
NKX3-1Q99801 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NKX3-1Q99801 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
NKX3-1Q99801 AC009831.1-201ENST00000580420 1582 ntBASIC19.95■□□□□ 0.78
NKX3-1Q99801 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX3-1Q99801 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.95■□□□□ 0.78
NKX3-1Q99801 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
NKX3-1Q99801 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NKX3-1Q99801 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
NKX3-1Q99801 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX3-1Q99801 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms