Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTX4Q96A99 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
PTX4Q96A99 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTX4Q96A99 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTX4Q96A99 MIR639-201ENST00000384974 98 ntBASIC19.73■□□□□ 0.75
PTX4Q96A99 AC093536.1-201ENST00000569153 554 ntBASIC19.73■□□□□ 0.75
PTX4Q96A99 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTX4Q96A99 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.73■□□□□ 0.75
PTX4Q96A99 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
PTX4Q96A99 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTX4Q96A99 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTX4Q96A99 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.72■□□□□ 0.75
PTX4Q96A99 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.72■□□□□ 0.75
PTX4Q96A99 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.72■□□□□ 0.75
PTX4Q96A99 AC092068.2-201ENST00000590491 1708 ntBASIC19.72■□□□□ 0.75
PTX4Q96A99 AL161729.1-201ENST00000604104 1402 ntBASIC19.72■□□□□ 0.75
PTX4Q96A99 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTX4Q96A99 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.71■□□□□ 0.75
PTX4Q96A99 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTX4Q96A99 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.71■□□□□ 0.75
PTX4Q96A99 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
PTX4Q96A99 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.71■□□□□ 0.75
PTX4Q96A99 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTX4Q96A99 ANOS2P-203ENST00000472227 1816 ntBASIC19.71■□□□□ 0.75
PTX4Q96A99 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTX4Q96A99 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.71■□□□□ 0.75
PTX4Q96A99 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTX4Q96A99 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.7■□□□□ 0.74
PTX4Q96A99 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTX4Q96A99 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PTX4Q96A99 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTX4Q96A99 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTX4Q96A99 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTX4Q96A99 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTX4Q96A99 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTX4Q96A99 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
PTX4Q96A99 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTX4Q96A99 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PTX4Q96A99 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTX4Q96A99 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PTX4Q96A99 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PTX4Q96A99 DUSP8P3-201ENST00000399571 1760 ntBASIC19.7■□□□□ 0.74
PTX4Q96A99 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PTX4Q96A99 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
PTX4Q96A99 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.69■□□□□ 0.74
PTX4Q96A99 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.69■□□□□ 0.74
PTX4Q96A99 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTX4Q96A99 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTX4Q96A99 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTX4Q96A99 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
PTX4Q96A99 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.69■□□□□ 0.74
PTX4Q96A99 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.69■□□□□ 0.74
PTX4Q96A99 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTX4Q96A99 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTX4Q96A99 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTX4Q96A99 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
PTX4Q96A99 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
PTX4Q96A99 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTX4Q96A99 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTX4Q96A99 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.68■□□□□ 0.74
PTX4Q96A99 AC233723.2-201ENST00000623798 2106 ntBASIC19.68■□□□□ 0.74
PTX4Q96A99 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTX4Q96A99 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTX4Q96A99 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTX4Q96A99 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTX4Q96A99 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTX4Q96A99 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTX4Q96A99 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
PTX4Q96A99 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
PTX4Q96A99 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTX4Q96A99 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.67■□□□□ 0.74
PTX4Q96A99 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTX4Q96A99 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.67■□□□□ 0.74
PTX4Q96A99 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.66■□□□□ 0.74
PTX4Q96A99 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.66■□□□□ 0.74
PTX4Q96A99 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTX4Q96A99 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTX4Q96A99 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
PTX4Q96A99 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTX4Q96A99 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTX4Q96A99 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTX4Q96A99 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
PTX4Q96A99 CLDN5-201ENST00000403084 2357 ntBASIC19.65■□□□□ 0.74
PTX4Q96A99 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.65■□□□□ 0.74
PTX4Q96A99 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.65■□□□□ 0.74
PTX4Q96A99 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTX4Q96A99 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.65■□□□□ 0.74
PTX4Q96A99 RAP2CP1-202ENST00000605179 643 ntBASIC19.65■□□□□ 0.74
PTX4Q96A99 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.65■□□□□ 0.74
PTX4Q96A99 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTX4Q96A99 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.65■□□□□ 0.74
PTX4Q96A99 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
PTX4Q96A99 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PTX4Q96A99 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.74
PTX4Q96A99 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PTX4Q96A99 AC007029.1-201ENST00000604183 313 ntBASIC19.64■□□□□ 0.73
PTX4Q96A99 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
PTX4Q96A99 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC19.64■□□□□ 0.73
PTX4Q96A99 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTX4Q96A99 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms