Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.89■■□□□ 1.41
SLC6A4P31645 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SLC6A4P31645 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SLC6A4P31645 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.89■■□□□ 1.41
SLC6A4P31645 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SLC6A4P31645 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.88■■□□□ 1.41
SLC6A4P31645 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.88■■□□□ 1.41
SLC6A4P31645 AC131274.2-201ENST00000580697 1507 ntBASIC23.88■■□□□ 1.41
SLC6A4P31645 HLA-L-211ENST00000482052 1765 ntBASIC23.88■■□□□ 1.41
SLC6A4P31645 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SLC6A4P31645 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SLC6A4P31645 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.87■■□□□ 1.41
SLC6A4P31645 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SLC6A4P31645 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
SLC6A4P31645 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SLC6A4P31645 AC142381.3-201ENST00000568208 1670 ntBASIC23.86■■□□□ 1.41
SLC6A4P31645 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SLC6A4P31645 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SLC6A4P31645 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC23.85■■□□□ 1.41
SLC6A4P31645 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.85■■□□□ 1.41
SLC6A4P31645 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.85■■□□□ 1.41
SLC6A4P31645 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.85■■□□□ 1.41
SLC6A4P31645 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SLC6A4P31645 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SLC6A4P31645 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
SLC6A4P31645 AC004448.1-201ENST00000458332 883 ntBASIC23.84■■□□□ 1.41
SLC6A4P31645 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.84■■□□□ 1.41
SLC6A4P31645 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SLC6A4P31645 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
SLC6A4P31645 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
SLC6A4P31645 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SLC6A4P31645 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.83■■□□□ 1.41
SLC6A4P31645 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.83■■□□□ 1.41
SLC6A4P31645 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.83■■□□□ 1.41
SLC6A4P31645 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.83■■□□□ 1.41
SLC6A4P31645 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SLC6A4P31645 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
SLC6A4P31645 AP003733.4-201ENST00000623785 1697 ntBASIC23.83■■□□□ 1.4
SLC6A4P31645 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
SLC6A4P31645 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.82■■□□□ 1.4
SLC6A4P31645 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
SLC6A4P31645 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.82■■□□□ 1.4
SLC6A4P31645 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.81■■□□□ 1.4
SLC6A4P31645 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SLC6A4P31645 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SLC6A4P31645 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
SLC6A4P31645 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.81■■□□□ 1.4
SLC6A4P31645 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC23.81■■□□□ 1.4
SLC6A4P31645 MIR6724-1-201ENST00000616420 92 ntBASIC23.81■■□□□ 1.4
SLC6A4P31645 MIR6724-2-201ENST00000616483 92 ntBASIC23.81■■□□□ 1.4
SLC6A4P31645 MIR6724-4-201ENST00000617390 92 ntBASIC23.81■■□□□ 1.4
SLC6A4P31645 MIR6724-3-201ENST00000622482 92 ntBASIC23.81■■□□□ 1.4
SLC6A4P31645 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.81■■□□□ 1.4
SLC6A4P31645 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC23.81■■□□□ 1.4
SLC6A4P31645 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SLC6A4P31645 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SLC6A4P31645 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SLC6A4P31645 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SLC6A4P31645 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SLC6A4P31645 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
SLC6A4P31645 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SLC6A4P31645 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.8■■□□□ 1.4
SLC6A4P31645 MIR6722-201ENST00000617286 78 ntBASIC23.8■■□□□ 1.4
SLC6A4P31645 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SLC6A4P31645 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SLC6A4P31645 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SLC6A4P31645 AC135731.1-201ENST00000569415 2548 ntBASIC23.79■■□□□ 1.4
SLC6A4P31645 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SLC6A4P31645 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SLC6A4P31645 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.79■■□□□ 1.4
SLC6A4P31645 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SLC6A4P31645 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SLC6A4P31645 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SLC6A4P31645 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SLC6A4P31645 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
SLC6A4P31645 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
SLC6A4P31645 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.78■■□□□ 1.4
SLC6A4P31645 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
SLC6A4P31645 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23.78■■□□□ 1.4
SLC6A4P31645 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SLC6A4P31645 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
SLC6A4P31645 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.78■■□□□ 1.4
SLC6A4P31645 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.77■■□□□ 1.4
SLC6A4P31645 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SLC6A4P31645 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SLC6A4P31645 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.77■■□□□ 1.4
SLC6A4P31645 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.77■■□□□ 1.4
SLC6A4P31645 AL117332.1-201ENST00000622628 974 ntBASIC23.77■■□□□ 1.4
SLC6A4P31645 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
SLC6A4P31645 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SLC6A4P31645 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC23.76■■□□□ 1.39
SLC6A4P31645 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SLC6A4P31645 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.76■■□□□ 1.39
SLC6A4P31645 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SLC6A4P31645 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.76■■□□□ 1.39
SLC6A4P31645 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC23.76■■□□□ 1.39
SLC6A4P31645 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
SLC6A4P31645 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.76■■□□□ 1.39
SLC6A4P31645 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SLC6A4P31645 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms