Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DMBP28068 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DMBP28068 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DMBP28068 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DMBP28068 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DMBP28068 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DMBP28068 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DMBP28068 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DMBP28068 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DMBP28068 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
HLA-DMBP28068 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DMBP28068 TSPY13P-201ENST00000338964 914 ntBASIC17.52■□□□□ 0.4
HLA-DMBP28068 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC17.52■□□□□ 0.4
HLA-DMBP28068 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DMBP28068 AC004987.1-201ENST00000428627 508 ntBASIC17.52■□□□□ 0.4
HLA-DMBP28068 ATP5G2P3-201ENST00000429083 425 ntBASIC17.52■□□□□ 0.4
HLA-DMBP28068 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DMBP28068 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC17.52■□□□□ 0.4
HLA-DMBP28068 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HLA-DMBP28068 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HLA-DMBP28068 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DMBP28068 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HLA-DMBP28068 RPS2P7-201ENST00000447334 885 ntBASIC17.51■□□□□ 0.39
HLA-DMBP28068 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC17.51■□□□□ 0.39
HLA-DMBP28068 AC018755.3-202ENST00000596210 929 ntBASIC17.51■□□□□ 0.39
HLA-DMBP28068 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.51■□□□□ 0.39
HLA-DMBP28068 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
HLA-DMBP28068 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HLA-DMBP28068 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DMBP28068 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC17.5■□□□□ 0.39
HLA-DMBP28068 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HLA-DMBP28068 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HLA-DMBP28068 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HLA-DMBP28068 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC17.5■□□□□ 0.39
HLA-DMBP28068 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
HLA-DMBP28068 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HLA-DMBP28068 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
HLA-DMBP28068 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HLA-DMBP28068 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HLA-DMBP28068 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HLA-DMBP28068 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC17.5■□□□□ 0.39
HLA-DMBP28068 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HLA-DMBP28068 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HLA-DMBP28068 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HLA-DMBP28068 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HLA-DMBP28068 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HLA-DMBP28068 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DMBP28068 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
HLA-DMBP28068 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC17.49■□□□□ 0.39
HLA-DMBP28068 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DMBP28068 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HLA-DMBP28068 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DMBP28068 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DMBP28068 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
HLA-DMBP28068 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DMBP28068 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DMBP28068 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DMBP28068 DUX4L9-201ENST00000449051 1259 ntBASIC17.48■□□□□ 0.39
HLA-DMBP28068 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC17.48■□□□□ 0.39
HLA-DMBP28068 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HLA-DMBP28068 AC129492.7-201ENST00000622992 756 ntBASIC17.48■□□□□ 0.39
HLA-DMBP28068 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC17.48■□□□□ 0.39
HLA-DMBP28068 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC17.48■□□□□ 0.39
HLA-DMBP28068 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DMBP28068 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC17.48■□□□□ 0.39
HLA-DMBP28068 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
HLA-DMBP28068 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC17.48■□□□□ 0.39
HLA-DMBP28068 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC17.47■□□□□ 0.39
HLA-DMBP28068 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HLA-DMBP28068 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC17.47■□□□□ 0.39
HLA-DMBP28068 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HLA-DMBP28068 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DMBP28068 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HLA-DMBP28068 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC17.47■□□□□ 0.39
HLA-DMBP28068 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DMBP28068 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DMBP28068 AC068473.5-201ENST00000616428 2072 ntBASIC17.47■□□□□ 0.39
HLA-DMBP28068 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC17.47■□□□□ 0.39
HLA-DMBP28068 DUSP8P5-201ENST00000422884 1815 ntBASIC17.47■□□□□ 0.39
HLA-DMBP28068 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DMBP28068 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HLA-DMBP28068 C9orf163-202ENST00000624034 2573 ntBASIC17.46■□□□□ 0.39
HLA-DMBP28068 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.46■□□□□ 0.39
HLA-DMBP28068 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC17.46■□□□□ 0.39
HLA-DMBP28068 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DMBP28068 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DMBP28068 GUK1-208ENST00000366728 842 ntTSL 2 BASIC17.46■□□□□ 0.39
HLA-DMBP28068 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC17.46■□□□□ 0.39
HLA-DMBP28068 DUX4L18-201ENST00000553347 1267 ntBASIC17.46■□□□□ 0.39
HLA-DMBP28068 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HLA-DMBP28068 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC17.46■□□□□ 0.39
HLA-DMBP28068 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
HLA-DMBP28068 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
HLA-DMBP28068 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC17.45■□□□□ 0.38
HLA-DMBP28068 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC17.45■□□□□ 0.38
HLA-DMBP28068 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DMBP28068 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DMBP28068 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
HLA-DMBP28068 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC17.45■□□□□ 0.38
HLA-DMBP28068 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms