Protein–RNA interactions for Protein: P22090

RPS4Y1, 40S ribosomal protein S4, Y isoform 1, humanhuman

Known RBP Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y1P22090 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPS4Y1P22090 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.25■□□□□ 0.99
RPS4Y1P22090 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.25■□□□□ 0.99
RPS4Y1P22090 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPS4Y1P22090 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.25■□□□□ 0.99
RPS4Y1P22090 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPS4Y1P22090 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPS4Y1P22090 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RPS4Y1P22090 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPS4Y1P22090 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.24■□□□□ 0.99
RPS4Y1P22090 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPS4Y1P22090 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPS4Y1P22090 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPS4Y1P22090 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPS4Y1P22090 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RPS4Y1P22090 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.23■□□□□ 0.99
RPS4Y1P22090 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.23■□□□□ 0.99
RPS4Y1P22090 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RPS4Y1P22090 BHLHE23-202ENST00000612929 1109 ntBASIC21.23■□□□□ 0.99
RPS4Y1P22090 AC012354.3-201ENST00000623734 483 ntBASIC21.23■□□□□ 0.99
RPS4Y1P22090 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
RPS4Y1P22090 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
RPS4Y1P22090 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RPS4Y1P22090 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.23■□□□□ 0.99
RPS4Y1P22090 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.23■□□□□ 0.99
RPS4Y1P22090 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RPS4Y1P22090 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.22■□□□□ 0.99
RPS4Y1P22090 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RPS4Y1P22090 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RPS4Y1P22090 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.22■□□□□ 0.99
RPS4Y1P22090 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
RPS4Y1P22090 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.22■□□□□ 0.99
RPS4Y1P22090 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
RPS4Y1P22090 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.22■□□□□ 0.99
RPS4Y1P22090 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RPS4Y1P22090 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RPS4Y1P22090 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RPS4Y1P22090 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
RPS4Y1P22090 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RPS4Y1P22090 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.21■□□□□ 0.99
RPS4Y1P22090 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RPS4Y1P22090 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RPS4Y1P22090 AC120024.1-201ENST00000562672 995 ntBASIC21.21■□□□□ 0.99
RPS4Y1P22090 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.21■□□□□ 0.99
RPS4Y1P22090 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RPS4Y1P22090 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
RPS4Y1P22090 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
RPS4Y1P22090 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
RPS4Y1P22090 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
RPS4Y1P22090 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
RPS4Y1P22090 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPS4Y1P22090 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.2■□□□□ 0.98
RPS4Y1P22090 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.2■□□□□ 0.98
RPS4Y1P22090 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.2■□□□□ 0.98
RPS4Y1P22090 AC010980.1-201ENST00000587192 1142 ntBASIC21.2■□□□□ 0.98
RPS4Y1P22090 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPS4Y1P22090 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPS4Y1P22090 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
RPS4Y1P22090 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
RPS4Y1P22090 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.2■□□□□ 0.98
RPS4Y1P22090 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
RPS4Y1P22090 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
RPS4Y1P22090 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.19■□□□□ 0.98
RPS4Y1P22090 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
RPS4Y1P22090 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.19■□□□□ 0.98
RPS4Y1P22090 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.19■□□□□ 0.98
RPS4Y1P22090 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.19■□□□□ 0.98
RPS4Y1P22090 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.19■□□□□ 0.98
RPS4Y1P22090 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RPS4Y1P22090 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.19■□□□□ 0.98
RPS4Y1P22090 AC131274.2-201ENST00000580697 1507 ntBASIC21.19■□□□□ 0.98
RPS4Y1P22090 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
RPS4Y1P22090 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPS4Y1P22090 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPS4Y1P22090 KRT18P24-201ENST00000344739 1156 ntBASIC21.18■□□□□ 0.98
RPS4Y1P22090 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPS4Y1P22090 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.18■□□□□ 0.98
RPS4Y1P22090 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPS4Y1P22090 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.18■□□□□ 0.98
RPS4Y1P22090 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.18■□□□□ 0.98
RPS4Y1P22090 AL022069.1-201ENST00000568025 1636 ntBASIC21.18■□□□□ 0.98
RPS4Y1P22090 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPS4Y1P22090 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.17■□□□□ 0.98
RPS4Y1P22090 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPS4Y1P22090 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPS4Y1P22090 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.17■□□□□ 0.98
RPS4Y1P22090 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.17■□□□□ 0.98
RPS4Y1P22090 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPS4Y1P22090 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPS4Y1P22090 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
RPS4Y1P22090 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RPS4Y1P22090 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RPS4Y1P22090 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
RPS4Y1P22090 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPS4Y1P22090 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPS4Y1P22090 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.16■□□□□ 0.98
RPS4Y1P22090 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPS4Y1P22090 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.16■□□□□ 0.98
RPS4Y1P22090 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPS4Y1P22090 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms