Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC31.04■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC31.04■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 ABCB10P4-201ENST00000566803 2184 ntBASIC31.04■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 AC004812.2-201ENST00000611079 2094 ntBASIC31.04■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC31.03■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC31.03■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 NALT1-201ENST00000429224 738 ntTSL 5 BASIC31.03■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC31.03■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC31.03■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC31.03■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC31.02■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC31.02■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC31.02■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC31.01■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC31.01■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 AP003733.4-201ENST00000623785 1697 ntBASIC31.01■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC31.01■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC31■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 AC103834.1-201ENST00000520383 144 ntBASIC31■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC30.99■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC30.99■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC30.99■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 RARRES2P6-201ENST00000567333 442 ntBASIC30.99■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 AC074183.2-201ENST00000623112 922 ntBASIC30.99■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC30.98■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC30.98■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC30.97■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC30.97■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC30.97■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 GRAMD4P7-201ENST00000578182 1232 ntBASIC30.97■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC30.96■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC30.96■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC30.95■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.95■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
SENP3-EIF4A1A0A087X0R7 MIR6089-201ENST00000616698 64 ntBASIC30.94■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC30.94■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC30.93■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.93■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC30.93■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC30.92■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC30.92■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC30.91■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC30.9■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.9■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms