Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Ddx28Q9CWT6 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddx28Q9CWT6 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddx28Q9CWT6 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddx28Q9CWT6 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddx28Q9CWT6 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC19.37■□□□□ 0.69
Ddx28Q9CWT6 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddx28Q9CWT6 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.37■□□□□ 0.69
Ddx28Q9CWT6 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Ddx28Q9CWT6 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx28Q9CWT6 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx28Q9CWT6 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx28Q9CWT6 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Ddx28Q9CWT6 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Ddx28Q9CWT6 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx28Q9CWT6 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx28Q9CWT6 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx28Q9CWT6 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx28Q9CWT6 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Ddx28Q9CWT6 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.35■□□□□ 0.69
Ddx28Q9CWT6 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx28Q9CWT6 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx28Q9CWT6 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx28Q9CWT6 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Ddx28Q9CWT6 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx28Q9CWT6 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC19.35■□□□□ 0.69
Ddx28Q9CWT6 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx28Q9CWT6 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx28Q9CWT6 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Ddx28Q9CWT6 AC153962.1-201ENSMUST00000218530 1948 ntBASIC19.34■□□□□ 0.69
Ddx28Q9CWT6 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC19.34■□□□□ 0.69
Ddx28Q9CWT6 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx28Q9CWT6 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx28Q9CWT6 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Ddx28Q9CWT6 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx28Q9CWT6 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx28Q9CWT6 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx28Q9CWT6 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Ddx28Q9CWT6 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ddx28Q9CWT6 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ddx28Q9CWT6 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
Ddx28Q9CWT6 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Ddx28Q9CWT6 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ddx28Q9CWT6 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Ddx28Q9CWT6 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx28Q9CWT6 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx28Q9CWT6 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx28Q9CWT6 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx28Q9CWT6 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx28Q9CWT6 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx28Q9CWT6 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx28Q9CWT6 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx28Q9CWT6 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx28Q9CWT6 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx28Q9CWT6 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx28Q9CWT6 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx28Q9CWT6 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ddx28Q9CWT6 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx28Q9CWT6 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx28Q9CWT6 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx28Q9CWT6 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx28Q9CWT6 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx28Q9CWT6 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx28Q9CWT6 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx28Q9CWT6 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx28Q9CWT6 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx28Q9CWT6 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Gm10420-201ENSMUST00000121713 882 ntBASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Ddx28Q9CWT6 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx28Q9CWT6 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Ddx28Q9CWT6 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx28Q9CWT6 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.27■□□□□ 0.68
Ddx28Q9CWT6 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx28Q9CWT6 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx28Q9CWT6 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
Ddx28Q9CWT6 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms