Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX3-1Q99801 AC141586.4-201ENST00000624558 1573 ntBASIC20.16■□□□□ 0.82
NKX3-1Q99801 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.16■□□□□ 0.82
NKX3-1Q99801 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.16■□□□□ 0.82
NKX3-1Q99801 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.16■□□□□ 0.82
NKX3-1Q99801 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
NKX3-1Q99801 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NKX3-1Q99801 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX3-1Q99801 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX3-1Q99801 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX3-1Q99801 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX3-1Q99801 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NKX3-1Q99801 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.15■□□□□ 0.82
NKX3-1Q99801 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NKX3-1Q99801 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NKX3-1Q99801 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.14■□□□□ 0.81
NKX3-1Q99801 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.14■□□□□ 0.81
NKX3-1Q99801 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NKX3-1Q99801 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.14■□□□□ 0.81
NKX3-1Q99801 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC20.14■□□□□ 0.81
NKX3-1Q99801 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.14■□□□□ 0.81
NKX3-1Q99801 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.14■□□□□ 0.81
NKX3-1Q99801 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NKX3-1Q99801 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NKX3-1Q99801 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
NKX3-1Q99801 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
NKX3-1Q99801 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.13■□□□□ 0.81
NKX3-1Q99801 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NKX3-1Q99801 ECEL1P2-201ENST00000461596 1295 ntBASIC20.13■□□□□ 0.81
NKX3-1Q99801 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.13■□□□□ 0.81
NKX3-1Q99801 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
NKX3-1Q99801 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX3-1Q99801 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NKX3-1Q99801 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX3-1Q99801 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
NKX3-1Q99801 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.12■□□□□ 0.81
NKX3-1Q99801 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NKX3-1Q99801 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NKX3-1Q99801 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NKX3-1Q99801 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
NKX3-1Q99801 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NKX3-1Q99801 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.12■□□□□ 0.81
NKX3-1Q99801 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
NKX3-1Q99801 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NKX3-1Q99801 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.11■□□□□ 0.81
NKX3-1Q99801 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NKX3-1Q99801 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.11■□□□□ 0.81
NKX3-1Q99801 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NKX3-1Q99801 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NKX3-1Q99801 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.11■□□□□ 0.81
NKX3-1Q99801 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
NKX3-1Q99801 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NKX3-1Q99801 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.11■□□□□ 0.81
NKX3-1Q99801 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NKX3-1Q99801 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NKX3-1Q99801 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.1■□□□□ 0.81
NKX3-1Q99801 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
NKX3-1Q99801 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NKX3-1Q99801 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NKX3-1Q99801 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
NKX3-1Q99801 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
NKX3-1Q99801 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
NKX3-1Q99801 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NKX3-1Q99801 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
NKX3-1Q99801 DUSP8P5-201ENST00000422884 1815 ntBASIC20.09■□□□□ 0.81
NKX3-1Q99801 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NKX3-1Q99801 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
NKX3-1Q99801 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.09■□□□□ 0.81
NKX3-1Q99801 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.09■□□□□ 0.81
NKX3-1Q99801 AC007029.1-201ENST00000604183 313 ntBASIC20.09■□□□□ 0.81
NKX3-1Q99801 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.09■□□□□ 0.81
NKX3-1Q99801 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
NKX3-1Q99801 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NKX3-1Q99801 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
NKX3-1Q99801 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
NKX3-1Q99801 RARRES2P2-201ENST00000394842 485 ntBASIC20.08■□□□□ 0.81
NKX3-1Q99801 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
NKX3-1Q99801 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
NKX3-1Q99801 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NKX3-1Q99801 FOXO3B-201ENST00000395675 1928 ntBASIC20.08■□□□□ 0.8
NKX3-1Q99801 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.8
NKX3-1Q99801 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.08■□□□□ 0.8
NKX3-1Q99801 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
NKX3-1Q99801 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
NKX3-1Q99801 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NKX3-1Q99801 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NKX3-1Q99801 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NKX3-1Q99801 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.07■□□□□ 0.8
NKX3-1Q99801 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
NKX3-1Q99801 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.07■□□□□ 0.8
NKX3-1Q99801 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NKX3-1Q99801 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.06■□□□□ 0.8
NKX3-1Q99801 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.06■□□□□ 0.8
NKX3-1Q99801 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.06■□□□□ 0.8
NKX3-1Q99801 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.06■□□□□ 0.8
NKX3-1Q99801 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NKX3-1Q99801 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NKX3-1Q99801 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NKX3-1Q99801 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NKX3-1Q99801 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms