Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTX4Q96A99 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
PTX4Q96A99 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTX4Q96A99 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTX4Q96A99 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTX4Q96A99 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTX4Q96A99 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTX4Q96A99 AC092296.2-201ENST00000589470 999 ntBASIC19.81■□□□□ 0.76
PTX4Q96A99 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTX4Q96A99 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTX4Q96A99 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.81■□□□□ 0.76
PTX4Q96A99 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTX4Q96A99 AL117328.2-201ENST00000624617 1940 ntBASIC19.8■□□□□ 0.76
PTX4Q96A99 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTX4Q96A99 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTX4Q96A99 RP9P-202ENST00000450133 1212 ntBASIC19.8■□□□□ 0.76
PTX4Q96A99 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
PTX4Q96A99 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTX4Q96A99 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PTX4Q96A99 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTX4Q96A99 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTX4Q96A99 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTX4Q96A99 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTX4Q96A99 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTX4Q96A99 C9orf163-202ENST00000624034 2573 ntBASIC19.79■□□□□ 0.76
PTX4Q96A99 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTX4Q96A99 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTX4Q96A99 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.78■□□□□ 0.76
PTX4Q96A99 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.78■□□□□ 0.76
PTX4Q96A99 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.78■□□□□ 0.76
PTX4Q96A99 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTX4Q96A99 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
PTX4Q96A99 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTX4Q96A99 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
PTX4Q96A99 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTX4Q96A99 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTX4Q96A99 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.78■□□□□ 0.76
PTX4Q96A99 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
PTX4Q96A99 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTX4Q96A99 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTX4Q96A99 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTX4Q96A99 ECEL1P2-201ENST00000461596 1295 ntBASIC19.77■□□□□ 0.76
PTX4Q96A99 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.77■□□□□ 0.76
PTX4Q96A99 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.77■□□□□ 0.76
PTX4Q96A99 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTX4Q96A99 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTX4Q96A99 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTX4Q96A99 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.77■□□□□ 0.76
PTX4Q96A99 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTX4Q96A99 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
PTX4Q96A99 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTX4Q96A99 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTX4Q96A99 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTX4Q96A99 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTX4Q96A99 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTX4Q96A99 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTX4Q96A99 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
PTX4Q96A99 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.76■□□□□ 0.75
PTX4Q96A99 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.76■□□□□ 0.75
PTX4Q96A99 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTX4Q96A99 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PTX4Q96A99 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.76■□□□□ 0.75
PTX4Q96A99 MIR7108-201ENST00000614319 87 ntBASIC19.76■□□□□ 0.75
PTX4Q96A99 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTX4Q96A99 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
PTX4Q96A99 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTX4Q96A99 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTX4Q96A99 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTX4Q96A99 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTX4Q96A99 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.75■□□□□ 0.75
PTX4Q96A99 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTX4Q96A99 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.75■□□□□ 0.75
PTX4Q96A99 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC19.75■□□□□ 0.75
PTX4Q96A99 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTX4Q96A99 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTX4Q96A99 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTX4Q96A99 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTX4Q96A99 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTX4Q96A99 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTX4Q96A99 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.75■□□□□ 0.75
PTX4Q96A99 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTX4Q96A99 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.74■□□□□ 0.75
PTX4Q96A99 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.74■□□□□ 0.75
PTX4Q96A99 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTX4Q96A99 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTX4Q96A99 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTX4Q96A99 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTX4Q96A99 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTX4Q96A99 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTX4Q96A99 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTX4Q96A99 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
PTX4Q96A99 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.74■□□□□ 0.75
PTX4Q96A99 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTX4Q96A99 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTX4Q96A99 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTX4Q96A99 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTX4Q96A99 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTX4Q96A99 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTX4Q96A99 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.73■□□□□ 0.75
PTX4Q96A99 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms