Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HLA-DMBP28068 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HLA-DMBP28068 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HLA-DMBP28068 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HLA-DMBP28068 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HLA-DMBP28068 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HLA-DMBP28068 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HLA-DMBP28068 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC17.61■□□□□ 0.41
HLA-DMBP28068 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DMBP28068 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
HLA-DMBP28068 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DMBP28068 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HLA-DMBP28068 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
HLA-DMBP28068 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DMBP28068 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC17.61■□□□□ 0.41
HLA-DMBP28068 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DMBP28068 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HLA-DMBP28068 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC17.61■□□□□ 0.41
HLA-DMBP28068 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
HLA-DMBP28068 AC133561.1-201ENST00000568600 2415 ntBASIC17.6■□□□□ 0.41
HLA-DMBP28068 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DMBP28068 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DMBP28068 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC17.6■□□□□ 0.41
HLA-DMBP28068 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
HLA-DMBP28068 SHD-204ENST00000599689 1729 ntTSL 5 BASIC17.6■□□□□ 0.41
HLA-DMBP28068 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HLA-DMBP28068 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DMBP28068 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HLA-DMBP28068 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DMBP28068 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DMBP28068 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
HLA-DMBP28068 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
HLA-DMBP28068 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DMBP28068 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC17.59■□□□□ 0.41
HLA-DMBP28068 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DMBP28068 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DMBP28068 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DMBP28068 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DMBP28068 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DMBP28068 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DMBP28068 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC17.58■□□□□ 0.41
HLA-DMBP28068 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
HLA-DMBP28068 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DMBP28068 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DMBP28068 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HLA-DMBP28068 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.58■□□□□ 0.4
HLA-DMBP28068 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC17.58■□□□□ 0.4
HLA-DMBP28068 KRT18P60-201ENST00000312876 1297 ntBASIC17.58■□□□□ 0.4
HLA-DMBP28068 AL592293.1-201ENST00000502889 1188 ntBASIC17.58■□□□□ 0.4
HLA-DMBP28068 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DMBP28068 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DMBP28068 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DMBP28068 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DMBP28068 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC17.57■□□□□ 0.4
HLA-DMBP28068 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
HLA-DMBP28068 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HLA-DMBP28068 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC17.57■□□□□ 0.4
HLA-DMBP28068 SPCS2P3-201ENST00000500401 656 ntBASIC17.57■□□□□ 0.4
HLA-DMBP28068 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DMBP28068 AL033527.3-201ENST00000566366 1196 ntBASIC17.57■□□□□ 0.4
HLA-DMBP28068 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC17.57■□□□□ 0.4
HLA-DMBP28068 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DMBP28068 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC17.57■□□□□ 0.4
HLA-DMBP28068 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DMBP28068 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DMBP28068 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DMBP28068 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HLA-DMBP28068 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC17.56■□□□□ 0.4
HLA-DMBP28068 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC17.56■□□□□ 0.4
HLA-DMBP28068 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC17.56■□□□□ 0.4
HLA-DMBP28068 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
HLA-DMBP28068 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DMBP28068 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DMBP28068 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DMBP28068 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC17.55■□□□□ 0.4
HLA-DMBP28068 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HLA-DMBP28068 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DMBP28068 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DMBP28068 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DMBP28068 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DMBP28068 KRT18P10-201ENST00000388836 1287 ntBASIC17.55■□□□□ 0.4
HLA-DMBP28068 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DMBP28068 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DMBP28068 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DMBP28068 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DMBP28068 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DMBP28068 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DMBP28068 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DMBP28068 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DMBP28068 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DMBP28068 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DMBP28068 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DMBP28068 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HLA-DMBP28068 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DMBP28068 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DMBP28068 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC17.54■□□□□ 0.4
HLA-DMBP28068 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DMBP28068 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DMBP28068 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
HLA-DMBP28068 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms