Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC31.18■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 AC087393.1-201ENST00000582896 145 ntBASIC31.18■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC31.17■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC31.17■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 IDNK-203ENST00000405990 629 ntTSL 2 BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC31.15■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 LSR-205ENST00000427250 1606 ntTSL 2 BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 THRA-202ENST00000394121 2260 ntTSL 2 BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 AL139246.5-201ENST00000606645 996 ntBASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC31.12■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC31.1■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 AC104564.3-201ENST00000582367 638 ntBASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 HLA-L-211ENST00000482052 1765 ntBASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC31.09■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 AC139795.1-202ENST00000500444 432 ntBASIC31.08■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SENP3-EIF4A1A0A087X0R7 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 LONRF2P2-201ENST00000439212 571 ntBASIC31.07■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.07■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 CASK-201ENST00000378154 2494 ntTSL 5 BASIC31.06■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC31.05■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC31.05■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
SENP3-EIF4A1A0A087X0R7 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms