Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC19.47■□□□□ 0.71
Ddx28Q9CWT6 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx28Q9CWT6 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx28Q9CWT6 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx28Q9CWT6 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx28Q9CWT6 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx28Q9CWT6 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx28Q9CWT6 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.46■□□□□ 0.71
Ddx28Q9CWT6 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx28Q9CWT6 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx28Q9CWT6 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx28Q9CWT6 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx28Q9CWT6 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
Ddx28Q9CWT6 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Gm7332-201ENSMUST00000118351 454 ntBASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Gm12366-201ENSMUST00000121722 873 ntBASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Gm5786-201ENSMUST00000085368 882 ntBASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC19.45■□□□□ 0.7
Ddx28Q9CWT6 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx28Q9CWT6 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx28Q9CWT6 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC19.44■□□□□ 0.7
Ddx28Q9CWT6 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx28Q9CWT6 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx28Q9CWT6 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC19.44■□□□□ 0.7
Ddx28Q9CWT6 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx28Q9CWT6 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx28Q9CWT6 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Ddx28Q9CWT6 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddx28Q9CWT6 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddx28Q9CWT6 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddx28Q9CWT6 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Ddx28Q9CWT6 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddx28Q9CWT6 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddx28Q9CWT6 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Ddx28Q9CWT6 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddx28Q9CWT6 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddx28Q9CWT6 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddx28Q9CWT6 Gm32051-202ENSMUST00000197905 2385 ntBASIC19.4■□□□□ 0.7
Ddx28Q9CWT6 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddx28Q9CWT6 AC115037.1-201ENSMUST00000223391 2173 ntBASIC19.4■□□□□ 0.7
Ddx28Q9CWT6 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddx28Q9CWT6 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddx28Q9CWT6 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ddx28Q9CWT6 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddx28Q9CWT6 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Ddx28Q9CWT6 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Ddx28Q9CWT6 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddx28Q9CWT6 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Ddx28Q9CWT6 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddx28Q9CWT6 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Ddx28Q9CWT6 Gm15043-201ENSMUST00000118843 1543 ntBASIC19.39■□□□□ 0.69
Ddx28Q9CWT6 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddx28Q9CWT6 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.39■□□□□ 0.69
Ddx28Q9CWT6 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Ddx28Q9CWT6 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Ddx28Q9CWT6 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Ddx28Q9CWT6 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddx28Q9CWT6 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ddx28Q9CWT6 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.38■□□□□ 0.69
Ddx28Q9CWT6 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ddx28Q9CWT6 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddx28Q9CWT6 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddx28Q9CWT6 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddx28Q9CWT6 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddx28Q9CWT6 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms