Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTX4Q96A99 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTX4Q96A99 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTX4Q96A99 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTX4Q96A99 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTX4Q96A99 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
PTX4Q96A99 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTX4Q96A99 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTX4Q96A99 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTX4Q96A99 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTX4Q96A99 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTX4Q96A99 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTX4Q96A99 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.91■□□□□ 0.78
PTX4Q96A99 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.91■□□□□ 0.78
PTX4Q96A99 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTX4Q96A99 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTX4Q96A99 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.91■□□□□ 0.78
PTX4Q96A99 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
PTX4Q96A99 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTX4Q96A99 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTX4Q96A99 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.9■□□□□ 0.78
PTX4Q96A99 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTX4Q96A99 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTX4Q96A99 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTX4Q96A99 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
PTX4Q96A99 SMPD5-203ENST00000639008 1464 ntBASIC19.9■□□□□ 0.78
PTX4Q96A99 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTX4Q96A99 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
PTX4Q96A99 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
PTX4Q96A99 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTX4Q96A99 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTX4Q96A99 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
PTX4Q96A99 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC19.89■□□□□ 0.77
PTX4Q96A99 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PTX4Q96A99 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
PTX4Q96A99 AC016575.1-201ENST00000607026 382 ntBASIC19.89■□□□□ 0.77
PTX4Q96A99 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTX4Q96A99 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PTX4Q96A99 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTX4Q96A99 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.88■□□□□ 0.77
PTX4Q96A99 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTX4Q96A99 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTX4Q96A99 KRT18P10-201ENST00000388836 1287 ntBASIC19.88■□□□□ 0.77
PTX4Q96A99 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
PTX4Q96A99 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.88■□□□□ 0.77
PTX4Q96A99 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.88■□□□□ 0.77
PTX4Q96A99 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTX4Q96A99 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTX4Q96A99 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
PTX4Q96A99 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTX4Q96A99 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTX4Q96A99 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTX4Q96A99 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTX4Q96A99 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTX4Q96A99 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTX4Q96A99 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.87■□□□□ 0.77
PTX4Q96A99 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.87■□□□□ 0.77
PTX4Q96A99 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTX4Q96A99 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.86■□□□□ 0.77
PTX4Q96A99 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
PTX4Q96A99 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTX4Q96A99 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTX4Q96A99 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.86■□□□□ 0.77
PTX4Q96A99 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTX4Q96A99 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTX4Q96A99 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTX4Q96A99 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTX4Q96A99 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
PTX4Q96A99 FOXO3B-201ENST00000395675 1928 ntBASIC19.85■□□□□ 0.77
PTX4Q96A99 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTX4Q96A99 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.85■□□□□ 0.77
PTX4Q96A99 AC060814.1-201ENST00000554326 538 ntBASIC19.85■□□□□ 0.77
PTX4Q96A99 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
PTX4Q96A99 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.85■□□□□ 0.77
PTX4Q96A99 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.85■□□□□ 0.77
PTX4Q96A99 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.84■□□□□ 0.77
PTX4Q96A99 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.84■□□□□ 0.77
PTX4Q96A99 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
PTX4Q96A99 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTX4Q96A99 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTX4Q96A99 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTX4Q96A99 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTX4Q96A99 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTX4Q96A99 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTX4Q96A99 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTX4Q96A99 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
PTX4Q96A99 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC19.84■□□□□ 0.77
PTX4Q96A99 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTX4Q96A99 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.77
PTX4Q96A99 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTX4Q96A99 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTX4Q96A99 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
PTX4Q96A99 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
PTX4Q96A99 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.83■□□□□ 0.76
PTX4Q96A99 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTX4Q96A99 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.82■□□□□ 0.76
PTX4Q96A99 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTX4Q96A99 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
PTX4Q96A99 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
PTX4Q96A99 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms