Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Sh3rf3Q8C120 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Sh3rf3Q8C120 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Sh3rf3Q8C120 Gm45444-201ENSMUST00000211394 898 ntBASIC21.92■■□□□ 1.1
Sh3rf3Q8C120 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
Sh3rf3Q8C120 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC21.92■■□□□ 1.1
Sh3rf3Q8C120 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21.92■■□□□ 1.1
Sh3rf3Q8C120 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Sh3rf3Q8C120 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.91■■□□□ 1.1
Sh3rf3Q8C120 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Sh3rf3Q8C120 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Sh3rf3Q8C120 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC21.9■■□□□ 1.1
Sh3rf3Q8C120 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Sh3rf3Q8C120 Gm28536-201ENSMUST00000190971 1317 ntBASIC21.9■■□□□ 1.1
Sh3rf3Q8C120 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Sh3rf3Q8C120 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Sh3rf3Q8C120 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Sh3rf3Q8C120 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Sh3rf3Q8C120 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Sh3rf3Q8C120 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
Sh3rf3Q8C120 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Sh3rf3Q8C120 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Sh3rf3Q8C120 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.09
Sh3rf3Q8C120 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Sh3rf3Q8C120 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
Sh3rf3Q8C120 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
Sh3rf3Q8C120 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Sh3rf3Q8C120 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Sh3rf3Q8C120 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
Sh3rf3Q8C120 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.88■■□□□ 1.09
Sh3rf3Q8C120 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Sh3rf3Q8C120 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC21.88■■□□□ 1.09
Sh3rf3Q8C120 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Sh3rf3Q8C120 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Sh3rf3Q8C120 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
Sh3rf3Q8C120 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Sh3rf3Q8C120 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Sh3rf3Q8C120 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Sh3rf3Q8C120 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Sh3rf3Q8C120 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Sh3rf3Q8C120 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Sh3rf3Q8C120 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Sh3rf3Q8C120 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Sh3rf3Q8C120 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Sh3rf3Q8C120 Notumos-201ENSMUST00000151998 2659 ntBASIC21.86■■□□□ 1.09
Sh3rf3Q8C120 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Sh3rf3Q8C120 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Sh3rf3Q8C120 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Sh3rf3Q8C120 Gm8093-201ENSMUST00000128935 1892 ntBASIC21.86■■□□□ 1.09
Sh3rf3Q8C120 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Sh3rf3Q8C120 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Sh3rf3Q8C120 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
Sh3rf3Q8C120 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Sh3rf3Q8C120 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Sh3rf3Q8C120 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Sh3rf3Q8C120 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Sh3rf3Q8C120 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Sh3rf3Q8C120 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Sh3rf3Q8C120 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Sh3rf3Q8C120 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
Sh3rf3Q8C120 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Sh3rf3Q8C120 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Sh3rf3Q8C120 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Sh3rf3Q8C120 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Sh3rf3Q8C120 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Sh3rf3Q8C120 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
Sh3rf3Q8C120 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Sh3rf3Q8C120 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Sh3rf3Q8C120 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Sh3rf3Q8C120 Gm11847-201ENSMUST00000125165 1119 ntBASIC21.83■■□□□ 1.09
Sh3rf3Q8C120 Gm43566-201ENSMUST00000196851 808 ntBASIC21.83■■□□□ 1.09
Sh3rf3Q8C120 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC21.83■■□□□ 1.09
Sh3rf3Q8C120 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.09
Sh3rf3Q8C120 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.08
Sh3rf3Q8C120 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
Sh3rf3Q8C120 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Sh3rf3Q8C120 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Sh3rf3Q8C120 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Sh3rf3Q8C120 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Sh3rf3Q8C120 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC21.82■■□□□ 1.08
Sh3rf3Q8C120 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
Sh3rf3Q8C120 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Sh3rf3Q8C120 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Sh3rf3Q8C120 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Sh3rf3Q8C120 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Sh3rf3Q8C120 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.82■■□□□ 1.08
Sh3rf3Q8C120 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Sh3rf3Q8C120 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Sh3rf3Q8C120 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC21.81■■□□□ 1.08
Sh3rf3Q8C120 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.81■■□□□ 1.08
Sh3rf3Q8C120 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Sh3rf3Q8C120 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Sh3rf3Q8C120 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Sh3rf3Q8C120 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Sh3rf3Q8C120 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Sh3rf3Q8C120 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC21.8■■□□□ 1.08
Sh3rf3Q8C120 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Sh3rf3Q8C120 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Sh3rf3Q8C120 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Sh3rf3Q8C120 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 64.3 ms