Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
RIPK4P57078 OR2A1-AS1-204ENST00000470435 602 ntBASIC30.74■■■□□ 2.51
RIPK4P57078 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
RIPK4P57078 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
RIPK4P57078 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC30.73■■■□□ 2.51
RIPK4P57078 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
RIPK4P57078 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
RIPK4P57078 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC30.73■■■□□ 2.51
RIPK4P57078 Z92544.1-202ENST00000571933 1220 ntBASIC30.73■■■□□ 2.51
RIPK4P57078 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
RIPK4P57078 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
RIPK4P57078 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
RIPK4P57078 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC30.73■■■□□ 2.51
RIPK4P57078 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
RIPK4P57078 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
RIPK4P57078 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
RIPK4P57078 HES6-204ENST00000409182 863 ntTSL 2 BASIC30.72■■■□□ 2.51
RIPK4P57078 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC30.72■■■□□ 2.51
RIPK4P57078 MIR6089-201ENST00000616698 64 ntBASIC30.72■■■□□ 2.51
RIPK4P57078 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC30.72■■■□□ 2.51
RIPK4P57078 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC30.72■■■□□ 2.51
RIPK4P57078 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC30.71■■■□□ 2.51
RIPK4P57078 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
RIPK4P57078 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC30.71■■■□□ 2.51
RIPK4P57078 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
RIPK4P57078 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC30.71■■■□□ 2.51
RIPK4P57078 AF131216.4-201ENST00000638924 1588 ntBASIC30.71■■■□□ 2.51
RIPK4P57078 LSR-205ENST00000427250 1606 ntTSL 2 BASIC30.7■■■□□ 2.51
RIPK4P57078 BX664725.1-201ENST00000438252 379 ntBASIC30.7■■■□□ 2.51
RIPK4P57078 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
RIPK4P57078 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
RIPK4P57078 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
RIPK4P57078 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC30.69■■■□□ 2.5
RIPK4P57078 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
RIPK4P57078 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC30.69■■■□□ 2.5
RIPK4P57078 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC30.69■■■□□ 2.5
RIPK4P57078 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
RIPK4P57078 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
RIPK4P57078 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC30.68■■■□□ 2.5
RIPK4P57078 AC021242.3-201ENST00000607598 1377 ntBASIC30.67■■■□□ 2.5
RIPK4P57078 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RIPK4P57078 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RIPK4P57078 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
RIPK4P57078 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
RIPK4P57078 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
RIPK4P57078 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RIPK4P57078 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
RIPK4P57078 GUSBP5-201ENST00000418136 578 ntBASIC30.65■■■□□ 2.5
RIPK4P57078 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
RIPK4P57078 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC30.65■■■□□ 2.5
RIPK4P57078 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RIPK4P57078 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RIPK4P57078 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RIPK4P57078 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.64■■■□□ 2.5
RIPK4P57078 KRT125P-201ENST00000546827 989 ntBASIC30.64■■■□□ 2.5
RIPK4P57078 MIR4787-201ENST00000607364 84 ntBASIC30.64■■■□□ 2.5
RIPK4P57078 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RIPK4P57078 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
RIPK4P57078 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RIPK4P57078 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC30.63■■■□□ 2.49
RIPK4P57078 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
RIPK4P57078 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
RIPK4P57078 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
RIPK4P57078 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC30.63■■■□□ 2.49
RIPK4P57078 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC30.63■■■□□ 2.49
RIPK4P57078 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
RIPK4P57078 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
RIPK4P57078 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
RIPK4P57078 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
RIPK4P57078 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.62■■■□□ 2.49
RIPK4P57078 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
RIPK4P57078 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC30.62■■■□□ 2.49
RIPK4P57078 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC30.62■■■□□ 2.49
RIPK4P57078 MED17-227ENST00000640521 2047 ntTSL 5 BASIC30.61■■■□□ 2.49
RIPK4P57078 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
RIPK4P57078 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC30.61■■■□□ 2.49
RIPK4P57078 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC30.61■■■□□ 2.49
RIPK4P57078 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
RIPK4P57078 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC30.6■■■□□ 2.49
RIPK4P57078 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC30.6■■■□□ 2.49
RIPK4P57078 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
RIPK4P57078 AC138932.3-201ENST00000567634 1902 ntBASIC30.6■■■□□ 2.49
RIPK4P57078 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.6■■■□□ 2.49
RIPK4P57078 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC30.6■■■□□ 2.49
RIPK4P57078 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RIPK4P57078 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
RIPK4P57078 SENP5-202ENST00000419026 973 ntTSL 3 BASIC30.59■■■□□ 2.49
RIPK4P57078 CREM-229ENST00000474362 1030 ntTSL 2 BASIC30.59■■■□□ 2.49
RIPK4P57078 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC30.59■■■□□ 2.49
RIPK4P57078 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RIPK4P57078 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RIPK4P57078 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RIPK4P57078 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
RIPK4P57078 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
RIPK4P57078 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC30.58■■■□□ 2.49
RIPK4P57078 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC30.58■■■□□ 2.49
RIPK4P57078 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC30.58■■■□□ 2.49
RIPK4P57078 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
RIPK4P57078 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC30.58■■■□□ 2.49
RIPK4P57078 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms