Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AL139125.2-201ENST00000623134 1869 ntBASIC31.35■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC31.33■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC31.32■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC31.32■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 MIR6765-201ENST00000614092 87 ntBASIC31.32■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC31.31■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 RPS2P7-201ENST00000447334 885 ntBASIC31.29■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC31.28■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC31.28■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 LINC01124-201ENST00000409786 2117 ntBASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
SENP3-EIF4A1A0A087X0R7 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC31.26■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.25■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 FOXO3B-201ENST00000395675 1928 ntBASIC31.25■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 RALB-208ENST00000631312 311 ntTSL 5 BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 BHLHE23-202ENST00000612929 1109 ntBASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC31.23■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 AC010980.1-201ENST00000587192 1142 ntBASIC31.22■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC31.22■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC31.21■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.21■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 PVT1_1.1-201ENST00000615125 194 ntBASIC31.21■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC31.21■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
SENP3-EIF4A1A0A087X0R7 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC31.19■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC31.19■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 YBX1P4-201ENST00000392794 808 ntBASIC31.19■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.19■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC31.19■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC31.18■■■□□ 2.58
SENP3-EIF4A1A0A087X0R7 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms