Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.138e-7■□□□□ 9.2
LIN28BQ6ZN17 PRAME-208ENST00000438888 566 ntAPPRIS ALT2 TSL 414.24□□□□□ -0.138e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-211ENST00000587692 1029 ntTSL 3 BASIC14.18□□□□□ -0.141e-8■□□□□ 9.2
LIN28BQ6ZN17 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.148e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-206ENST00000428833 641 ntTSL 213.94□□□□□ -0.181e-8■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-210ENST00000453754 401 ntTSL 313.93□□□□□ -0.181e-8■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-207ENST00000431043 998 ntTSL 213.86□□□□□ -0.191e-8■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC13.86□□□□□ -0.191e-8■□□□□ 9.2
LIN28BQ6ZN17 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.198e-7■□□□□ 9.2
LIN28BQ6ZN17 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.218e-7■□□□□ 9.2
LIN28BQ6ZN17 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.258e-7■□□□□ 9.2
LIN28BQ6ZN17 PRAME-210ENST00000442481 581 ntTSL 313.44□□□□□ -0.268e-7■□□□□ 9.2
LIN28BQ6ZN17 VRK1-204ENST00000555351 667 ntTSL 213.4□□□□□ -0.261e-8■□□□□ 9.2
LIN28BQ6ZN17 NCDN-203ENST00000373253 3677 ntTSL 1 (best) BASIC13.28□□□□□ -0.288e-7■□□□□ 9.2
LIN28BQ6ZN17 NCDN-204ENST00000423723 986 ntTSL 313.03□□□□□ -0.328e-7■□□□□ 9.2
LIN28BQ6ZN17 HNRNPC-231ENST00000557336 580 ntTSL 312.93□□□□□ -0.341e-8■□□□□ 9.2
LIN28BQ6ZN17 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.388e-7■□□□□ 9.2
LIN28BQ6ZN17 GATAD2B-211ENST00000637918 1027 ntTSL 512.62□□□□□ -0.391e-8■□□□□ 9.2
LIN28BQ6ZN17 C9orf78-205ENST00000480023 2143 ntTSL 212.29□□□□□ -0.448e-7■□□□□ 9.2
LIN28BQ6ZN17 ATIC-214ENST00000488712 744 ntTSL 312.24□□□□□ -0.458e-7■□□□□ 9.2
LIN28BQ6ZN17 LIG1-201ENST00000263274 3384 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.468e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-212ENST00000589187 568 ntTSL 4 BASIC12.05□□□□□ -0.481e-8■□□□□ 9.2
LIN28BQ6ZN17 LIG1-213ENST00000596672 792 ntTSL 312.05□□□□□ -0.488e-7■□□□□ 9.2
LIN28BQ6ZN17 LIG1-221ENST00000613670 3949 ntTSL 1 (best) BASIC11.93□□□□□ -0.58e-7■□□□□ 9.2
LIN28BQ6ZN17 LIG1-210ENST00000596332 584 ntTSL 211.69□□□□□ -0.548e-7■□□□□ 9.2
LIN28BQ6ZN17 NCDN-202ENST00000373243 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.568e-7■□□□□ 9.2
LIN28BQ6ZN17 GATAD2B-201ENST00000368655 7478 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.581e-8■□□□□ 9.2
LIN28BQ6ZN17 LIG1-207ENST00000594759 4102 ntTSL 1 (best)11.4□□□□□ -0.588e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-202ENST00000414002 430 ntTSL 211.19□□□□□ -0.621e-8■□□□□ 9.2
LIN28BQ6ZN17 SEM1-206ENST00000449279 699 ntTSL 310.83□□□□□ -0.681e-8■□□□□ 9.2
LIN28BQ6ZN17 SEM1-205ENST00000444799 1590 ntTSL 2 BASIC10.81□□□□□ -0.681e-8■□□□□ 9.2
LIN28BQ6ZN17 C9orf78-203ENST00000461539 637 ntTSL 510.6□□□□□ -0.718e-7■□□□□ 9.2
LIN28BQ6ZN17 SEM1-214ENST00000613919 610 ntTSL 210.43□□□□□ -0.741e-8■□□□□ 9.2
LIN28BQ6ZN17 SEM1-204ENST00000417009 350 ntTSL 3 BASIC10.24□□□□□ -0.771e-8■□□□□ 9.2
LIN28BQ6ZN17 SEM1-203ENST00000413065 661 ntTSL 1 (best) BASIC10.11□□□□□ -0.791e-8■□□□□ 9.2
LIN28BQ6ZN17 SEM1-210ENST00000488005 775 ntTSL 2 BASIC10.07□□□□□ -0.81e-8■□□□□ 9.2
LIN28BQ6ZN17 LIG1-220ENST00000601091 3957 ntTSL 59.88□□□□□ -0.838e-7■□□□□ 9.2
LIN28BQ6ZN17 ATIC-202ENST00000413174 695 ntTSL 59.61□□□□□ -0.878e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-220ENST00000624128 672 ntTSL 29.57□□□□□ -0.881e-8■□□□□ 9.2
LIN28BQ6ZN17 SEM1-223ENST00000623498 582 ntTSL 5 BASIC9.53□□□□□ -0.881e-8■□□□□ 9.2
LIN28BQ6ZN17 LRRFIP2-203ENST00000396428 1791 ntTSL 2 BASIC9.49□□□□□ -0.898e-7■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-205ENST00000510719 566 ntTSL 39.48□□□□□ -0.898e-7■□□□□ 9.2
LIN28BQ6ZN17 SEM1-224ENST00000623693 729 ntTSL 5 BASIC9.02□□□□□ -0.971e-8■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-218ENST00000623901 711 ntTSL 5 BASIC8.99□□□□□ -0.971e-8■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-217ENST00000623650 886 ntTSL 58.66□□□□□ -1.021e-8■□□□□ 9.2
LIN28BQ6ZN17 SEM1-207ENST00000466986 507 ntTSL 28.34□□□□□ -1.071e-8■□□□□ 9.2
LIN28BQ6ZN17 CACYBP-209ENST00000613570 2835 ntTSL 2 BASIC8.3□□□□□ -1.088e-7■□□□□ 9.2
LIN28BQ6ZN17 UBR4-202ENST00000375224 3475 ntTSL 2 BASIC8.23□□□□□ -1.098e-7■□□□□ 9.2
LIN28BQ6ZN17 VMA21-203ENST00000477649 485 ntTSL 38.11□□□□□ -1.118e-7■□□□□ 9.2
LIN28BQ6ZN17 LRRFIP2-212ENST00000460646 2857 ntTSL 1 (best)7.49□□□□□ -1.218e-7■□□□□ 9.2
LIN28BQ6ZN17 PANK2-204ENST00000471830 622 ntTSL 37.38□□□□□ -1.238e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.99□□□□□ -1.291e-8■□□□□ 9.2
LIN28BQ6ZN17 SEM1-219ENST00000618105 544 ntTSL 26.72□□□□□ -1.331e-8■□□□□ 9.2
LIN28BQ6ZN17 HNRNPC-233ENST00000557768 599 ntTSL 36.22□□□□□ -1.411e-8■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-216ENST00000623267 374 ntTSL 55.77□□□□□ -1.491e-8■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.77□□□□□ -1.491e-8■□□□□ 9.2
LIN28BQ6ZN17 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC5.76□□□□□ -1.498e-7■□□□□ 9.2
LIN28BQ6ZN17 LRRFIP2-219ENST00000496479 3585 ntTSL 25.65□□□□□ -1.518e-7■□□□□ 9.2
LIN28BQ6ZN17 CCDC6-202ENST00000491922 2642 ntTSL 25.58□□□□□ -1.528e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-204ENST00000425170 489 ntTSL 25.03□□□□□ -1.61e-8■□□□□ 9.2
LIN28BQ6ZN17 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.94□□□□□ -1.628e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.83□□□□□ -1.641e-8■□□□□ 9.2
LIN28BQ6ZN17 SEM1-217ENST00000617133 591 ntTSL 24.57□□□□□ -1.681e-8■□□□□ 9.2
LIN28BQ6ZN17 SEM1-220ENST00000619259 462 ntTSL 24.19□□□□□ -1.741e-8■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-205ENST00000427501 680 ntTSL 23.8□□□□□ -1.81e-8■□□□□ 9.2
LIN28BQ6ZN17 CTR9-205ENST00000529898 594 ntTSL 23.35□□□□□ -1.878e-7■□□□□ 9.2
LIN28BQ6ZN17 STAG2-217ENST00000475602 356 ntTSL 33.2□□□□□ -1.98e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-208ENST00000433843 388 ntTSL 22.02□□□□□ -2.091e-8■□□□□ 9.2
LIN28BQ6ZN17 SEM1-209ENST00000482389 2773 ntTSL 22□□□□□ -2.091e-8■□□□□ 9.2
LIN28BQ6ZN17 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 01e-85■□□□□ 9.2
LIN28BQ6ZN17 SERPINA1-220ENST00000636712 1485 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.171e-85■□□□□ 9.2
LIN28BQ6ZN17 SERPINA1-205ENST00000404814 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.191e-85■□□□□ 9.2
LIN28BQ6ZN17 SERPINA1-203ENST00000393088 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.31e-85■□□□□ 9.2
LIN28BQ6ZN17 SERPINA1-204ENST00000402629 1450 ntTSL 1 (best) BASIC13.1□□□□□ -0.311e-85■□□□□ 9.2
LIN28BQ6ZN17 SERPINA1-210ENST00000489769 1562 ntTSL 1 (best)12.59□□□□□ -0.391e-85■□□□□ 9.2
LIN28BQ6ZN17 SERPINA1-202ENST00000393087 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.41e-85■□□□□ 9.2
LIN28BQ6ZN17 SERPINA1-201ENST00000355814 3236 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.981e-85■□□□□ 9.2
LIN28BQ6ZN17 SERPINA1-208ENST00000448921 3532 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.011e-85■□□□□ 9.2
LIN28BQ6ZN17 SERPINA1-207ENST00000440909 3144 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.051e-85■□□□□ 9.2
LIN28BQ6ZN17 SERPINA1-206ENST00000437397 3340 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.141e-85■□□□□ 9.2
LIN28BQ6ZN17 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC6.35□□□□□ -1.396e-7■□□□□ 9.2
LIN28BQ6ZN17 FLNC-203ENST00000388853 570 ntTSL 218.71■□□□□ 0.591e-7■□□□□ 9.2
LIN28BQ6ZN17 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.879e-10■□□□□ 9.2
LIN28BQ6ZN17 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC22.77■■□□□ 1.249e-10■□□□□ 9.2
LIN28BQ6ZN17 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC22.7■■□□□ 1.229e-10■□□□□ 9.2
LIN28BQ6ZN17 RNASET2-204ENST00000421787 1924 ntTSL 221.61■■□□□ 1.059e-10■□□□□ 9.2
LIN28BQ6ZN17 RNASET2-207ENST00000478180 963 ntTSL 520.37■□□□□ 0.859e-10■□□□□ 9.2
LIN28BQ6ZN17 RNASET2-201ENST00000028008 1220 ntTSL 520.32■□□□□ 0.849e-10■□□□□ 9.2
LIN28BQ6ZN17 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.579e-10■□□□□ 9.2
LIN28BQ6ZN17 RNASET2-212ENST00000510083 2280 ntTSL 215.96■□□□□ 0.149e-10■□□□□ 9.2
LIN28BQ6ZN17 LAMA5-207ENST00000471042 487 ntTSL 215.55■□□□□ 0.089e-10■□□□□ 9.2
LIN28BQ6ZN17 RNASET2-205ENST00000467705 524 ntTSL 510.77□□□□□ -0.699e-10■□□□□ 9.2
LIN28BQ6ZN17 FTL-201ENST00000331825 878 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.35e-68■□□□□ 9.2
LIN28BQ6ZN17 NUP214-225ENST00000531584 545 ntTSL 44.86□□□□□ -1.635e-18■□□□□ 9.2
LIN28BQ6ZN17 TM4SF1-204ENST00000493348 976 ntTSL 28.96□□□□□ -0.984e-11■□□□□ 9.2
LIN28BQ6ZN17 TM4SF1-201ENST00000305366 1771 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.024e-11■□□□□ 9.2
LIN28BQ6ZN17 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.95□□□□□ -1.624e-11■□□□□ 9.2
LIN28BQ6ZN17 A2M-202ENST00000404455 623 ntTSL 56.34□□□□□ -1.391e-33■□□□□ 9.2
LIN28BQ6ZN17 A2M-209ENST00000539638 590 ntTSL 46.34□□□□□ -1.391e-33■□□□□ 9.2
LIN28BQ6ZN17 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.211e-14■□□□□ 9.2
Retrieved 100 of 21,972 protein–RNA pairs in 384.8 ms