Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 SSR3-207ENST00000478842 612 ntTSL 36.24□□□□□ -1.418e-7■□□□□ 9.3
LIN28BQ6ZN17 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.34□□□□□ -1.558e-7■□□□□ 9.3
LIN28BQ6ZN17 SSR3-209ENST00000498205 593 ntTSL 24.72□□□□□ -1.658e-7■□□□□ 9.3
LIN28BQ6ZN17 GLG1-210ENST00000565474 601 ntTSL 44.33□□□□□ -1.727e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.53■■■□□ 2.646e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.56■■■□□ 2.486e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-202ENST00000561688 705 ntTSL 230.13■■■□□ 2.416e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-204ENST00000563029 776 ntTSL 229.44■■■□□ 2.36e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.3■■■□□ 2.286e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-206ENST00000566379 961 ntTSL 224.87■■□□□ 1.576e-9■□□□□ 9.3
LIN28BQ6ZN17 ECI1-205ENST00000563447 965 ntTSL 218.33■□□□□ 0.526e-9■□□□□ 9.3
LIN28BQ6ZN17 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.63■□□□□ 0.411e-7■□□□□ 9.3
LIN28BQ6ZN17 INSR-207ENST00000601099 570 ntTSL 315.03■□□□□ -01e-7■□□□□ 9.3
LIN28BQ6ZN17 INSR-203ENST00000593970 419 ntTSL 213.91□□□□□ -0.181e-7■□□□□ 9.3
LIN28BQ6ZN17 FADS1-210ENST00000496123 693 ntTSL 512.26□□□□□ -0.451e-7■□□□□ 9.3
LIN28BQ6ZN17 FADS1-213ENST00000539999 405 ntTSL 36.1□□□□□ -1.431e-7■□□□□ 9.3
LIN28BQ6ZN17 PTBP3-205ENST00000374257 7240 ntAPPRIS ALT1 TSL 2 BASIC8.53□□□□□ -1.043e-6■□□□□ 9.3
LIN28BQ6ZN17 PTBP3-203ENST00000343327 2755 ntTSL 2 BASIC8.18□□□□□ -1.13e-6■□□□□ 9.3
LIN28BQ6ZN17 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC7.9□□□□□ -1.153e-6■□□□□ 9.3
LIN28BQ6ZN17 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.383e-6■□□□□ 9.3
LIN28BQ6ZN17 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.03□□□□□ -1.443e-6■□□□□ 9.3
LIN28BQ6ZN17 CALR-204ENST00000586967 394 ntTSL 215.87■□□□□ 0.131e-31■□□□□ 9.3
LIN28BQ6ZN17 TRIM28-206ENST00000595974 665 ntTSL 318.22■□□□□ 0.512e-9■□□□□ 9.3
LIN28BQ6ZN17 TRIM28-207ENST00000597136 1552 ntTSL 216.6■□□□□ 0.252e-9■□□□□ 9.3
LIN28BQ6ZN17 TRIM28-214ENST00000600840 338 ntTSL 29.94□□□□□ -0.822e-9■□□□□ 9.3
LIN28BQ6ZN17 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.294e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-206ENST00000553529 562 ntTSL 420.82■□□□□ 0.924e-7■□□□□ 9.3
LIN28BQ6ZN17 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.47■□□□□ 0.874e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-204ENST00000553324 566 ntTSL 417.21■□□□□ 0.354e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-235ENST00000557740 569 ntTSL 416.74■□□□□ 0.274e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.65■□□□□ 0.264e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-208ENST00000553868 941 ntTSL 216.11■□□□□ 0.174e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-217ENST00000555116 1885 ntTSL 215.84■□□□□ 0.134e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-210ENST00000553950 584 ntTSL 215.59■□□□□ 0.094e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-219ENST00000555563 895 ntTSL 515.41■□□□□ 0.064e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-231ENST00000557433 1904 ntTSL 1 (best)15.3■□□□□ 0.044e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.3■□□□□ 0.044e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC15.19■□□□□ 0.024e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-234ENST00000557703 542 ntTSL 415.05■□□□□ -04e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-223ENST00000556689 768 ntTSL 314.77□□□□□ -0.054e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-211ENST00000554310 579 ntTSL 414.68□□□□□ -0.064e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-230ENST00000557427 569 ntTSL 414.6□□□□□ -0.074e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-227ENST00000557269 576 ntTSL 514.09□□□□□ -0.154e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-214ENST00000554604 879 ntTSL 513.99□□□□□ -0.174e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-221ENST00000555773 600 ntTSL 213.54□□□□□ -0.244e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-209ENST00000553949 552 ntTSL 313.4□□□□□ -0.264e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-222ENST00000555774 2311 ntTSL 1 (best)13.09□□□□□ -0.314e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-229ENST00000557348 1659 ntTSL 212.92□□□□□ -0.344e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-205ENST00000553474 1765 ntTSL 2 BASIC12.8□□□□□ -0.364e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-216ENST00000554975 780 ntTSL 312.6□□□□□ -0.394e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-215ENST00000554656 817 ntTSL 312.2□□□□□ -0.464e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-213ENST00000554600 837 ntTSL 212.01□□□□□ -0.494e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-220ENST00000555634 964 ntTSL 512.01□□□□□ -0.494e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-207ENST00000553837 2152 ntTSL 512□□□□□ -0.494e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-212ENST00000554467 3416 ntTSL 211.96□□□□□ -0.54e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-218ENST00000555213 611 ntTSL 311.95□□□□□ -0.54e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-224ENST00000556737 572 ntTSL 211.71□□□□□ -0.534e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-226ENST00000556825 2215 ntTSL 1 (best)11.66□□□□□ -0.544e-7■□□□□ 9.3
LIN28BQ6ZN17 SHMT2-201ENST00000328923 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.694e-7■□□□□ 9.3
LIN28BQ6ZN17 WARS-220ENST00000554950 1376 ntTSL 210.61□□□□□ -0.714e-7■□□□□ 9.3
LIN28BQ6ZN17 PBX2-202ENST00000478678 1320 ntTSL 1 (best)25.36■■□□□ 1.651e-6■□□□□ 9.3
LIN28BQ6ZN17 PBX2-205ENST00000496171 1050 ntTSL 218.75■□□□□ 0.591e-6■□□□□ 9.3
LIN28BQ6ZN17 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.251e-6■□□□□ 9.3
LIN28BQ6ZN17 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.36e-10■□□□□ 9.3
LIN28BQ6ZN17 CLU-202ENST00000405140 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.26e-10■□□□□ 9.3
LIN28BQ6ZN17 CLU-211ENST00000522299 2807 ntTSL 211.24□□□□□ -0.616e-10■□□□□ 9.3
LIN28BQ6ZN17 CLU-201ENST00000316403 3080 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.76e-10■□□□□ 9.3
LIN28BQ6ZN17 MOGS-206ENST00000462189 2400 ntTSL 211.74□□□□□ -0.532e-10■□□□□ 9.3
LIN28BQ6ZN17 SSR1-207ENST00000479485 640 ntTSL 24.37□□□□□ -1.711e-9■□□□□ 9.3
LIN28BQ6ZN17 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.93■■□□□ 1.268e-15■□□□□ 9.2
LIN28BQ6ZN17 USP48-210ENST00000489108 443 ntTSL 219.06■□□□□ 0.643e-9■□□□□ 9.2
LIN28BQ6ZN17 EZR-204ENST00000476189 956 ntTSL 313.77□□□□□ -0.213e-9■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-207ENST00000513231 871 ntTSL 1 (best)27.18■■□□□ 1.948e-7■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-206ENST00000510934 589 ntTSL 223.34■■□□□ 1.338e-7■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC22.42■■□□□ 1.188e-7■□□□□ 9.2
LIN28BQ6ZN17 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.998e-7■□□□□ 9.2
LIN28BQ6ZN17 DYNC1H1-204ENST00000555062 1351 ntTSL 219.84■□□□□ 0.771e-8■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.64■□□□□ 0.738e-7■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.628e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.6■□□□□ 0.571e-8■□□□□ 9.2
LIN28BQ6ZN17 UBE2K-202ENST00000438068 2262 ntTSL 218.58■□□□□ 0.578e-7■□□□□ 9.2
LIN28BQ6ZN17 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.41■□□□□ 0.548e-7■□□□□ 9.2
LIN28BQ6ZN17 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.84■□□□□ 0.458e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-203ENST00000420199 1002 ntTSL 317.74■□□□□ 0.431e-8■□□□□ 9.2
LIN28BQ6ZN17 ATIC-208ENST00000444305 569 ntTSL 417.53■□□□□ 0.48e-7■□□□□ 9.2
LIN28BQ6ZN17 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.398e-7■□□□□ 9.2
LIN28BQ6ZN17 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.368e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-215ENST00000623163 851 ntTSL 516.7■□□□□ 0.261e-8■□□□□ 9.2
LIN28BQ6ZN17 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.2■□□□□ 0.188e-7■□□□□ 9.2
LIN28BQ6ZN17 LIG1-206ENST00000594067 2697 ntTSL 215.94■□□□□ 0.148e-7■□□□□ 9.2
LIN28BQ6ZN17 SNHG5-209ENST00000435947 696 ntTSL 215.81■□□□□ 0.121e-8■□□□□ 9.2
LIN28BQ6ZN17 C9orf78-202ENST00000461349 783 ntTSL 315.04■□□□□ -08e-7■□□□□ 9.2
LIN28BQ6ZN17 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.018e-7■□□□□ 9.2
LIN28BQ6ZN17 PRAME-211ENST00000476336 589 ntTSL 214.9□□□□□ -0.028e-7■□□□□ 9.2
LIN28BQ6ZN17 PRAME-207ENST00000420709 705 ntAPPRIS ALT2 TSL 214.85□□□□□ -0.038e-7■□□□□ 9.2
LIN28BQ6ZN17 PRAME-212ENST00000485532 709 ntTSL 314.57□□□□□ -0.088e-7■□□□□ 9.2
LIN28BQ6ZN17 C9orf78-204ENST00000461762 2390 ntTSL 214.49□□□□□ -0.098e-7■□□□□ 9.2
LIN28BQ6ZN17 SEM1-201ENST00000248566 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.121e-8■□□□□ 9.2
LIN28BQ6ZN17 UBR4-211ENST00000467272 891 ntTSL 514.29□□□□□ -0.128e-7■□□□□ 9.2
LIN28BQ6ZN17 PRAME-204ENST00000403441 567 ntAPPRIS ALT2 TSL 314.27□□□□□ -0.138e-7■□□□□ 9.2
Retrieved 100 of 21,972 protein–RNA pairs in 301.4 ms