Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.912e-11■□□□□ 9.5
LIN28BQ6ZN17 FKBP8-202ENST00000544835 1292 ntTSL 1 (best)20.67■□□□□ 0.92e-11■□□□□ 9.5
LIN28BQ6ZN17 FKBP8-205ENST00000596494 439 ntTSL 319.64■□□□□ 0.732e-11■□□□□ 9.5
LIN28BQ6ZN17 FKBP8-211ENST00000601844 1548 ntTSL 519■□□□□ 0.632e-11■□□□□ 9.5
LIN28BQ6ZN17 FKBP8-204ENST00000596015 612 ntTSL 318.9■□□□□ 0.622e-11■□□□□ 9.5
LIN28BQ6ZN17 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.392e-11■□□□□ 9.5
LIN28BQ6ZN17 FKBP8-208ENST00000597611 966 ntTSL 317.33■□□□□ 0.362e-11■□□□□ 9.5
LIN28BQ6ZN17 TXNDC5-203ENST00000469459 715 ntTSL 213.68□□□□□ -0.221e-8■□□□□ 9.5
LIN28BQ6ZN17 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.555e-7■□□□□ 9.5
LIN28BQ6ZN17 LSM1-205ENST00000523511 700 ntTSL 318.32■□□□□ 0.525e-7■□□□□ 9.5
LIN28BQ6ZN17 LSM1-204ENST00000522515 1568 ntTSL 317.72■□□□□ 0.435e-7■□□□□ 9.5
LIN28BQ6ZN17 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.02■□□□□ 0.321e-10■□□□□ 9.5
LIN28BQ6ZN17 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.83■□□□□ 0.285e-7■□□□□ 9.5
LIN28BQ6ZN17 UQCC2-202ENST00000374231 509 ntTSL 316.42■□□□□ 0.225e-7■□□□□ 9.5
LIN28BQ6ZN17 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.065e-7■□□□□ 9.5
LIN28BQ6ZN17 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC15.42■□□□□ 0.065e-7■□□□□ 9.5
LIN28BQ6ZN17 GANAB-207ENST00000526732 824 ntTSL 213.72□□□□□ -0.215e-7■□□□□ 9.5
LIN28BQ6ZN17 SMC1A-206ENST00000470241 838 ntTSL 311.6□□□□□ -0.555e-7■□□□□ 9.5
LIN28BQ6ZN17 UQCC2-203ENST00000606961 4365 nt11.47□□□□□ -0.575e-7■□□□□ 9.5
LIN28BQ6ZN17 NAE1-210ENST00000563221 532 ntTSL 29.02□□□□□ -0.975e-7■□□□□ 9.5
LIN28BQ6ZN17 NAE1-219ENST00000568672 523 ntTSL 29.02□□□□□ -0.975e-7■□□□□ 9.5
LIN28BQ6ZN17 LSM1-202ENST00000520286 776 ntTSL 1 (best)6.73□□□□□ -1.335e-7■□□□□ 9.5
LIN28BQ6ZN17 NAE1-207ENST00000562428 473 ntTSL 54.89□□□□□ -1.635e-7■□□□□ 9.5
LIN28BQ6ZN17 NAE1-216ENST00000566663 576 ntTSL 34.39□□□□□ -1.715e-7■□□□□ 9.5
LIN28BQ6ZN17 NAE1-206ENST00000562074 571 ntTSL 23.28□□□□□ -1.885e-7■□□□□ 9.5
LIN28BQ6ZN17 MAN2A1-202ENST00000502261 448 ntTSL 54.32□□□□□ -1.726e-9■□□□□ 9.5
LIN28BQ6ZN17 MAN2A1-205ENST00000508043 546 ntTSL 32.53□□□□□ -26e-9■□□□□ 9.5
LIN28BQ6ZN17 AC002480.1-201ENST00000442252 1282 ntTSL 1 (best) BASIC11.11□□□□□ -0.631e-8■□□□□ 9.5
LIN28BQ6ZN17 AC002480.4-201ENST00000414116 2592 ntTSL 1 (best) BASIC9.03□□□□□ -0.961e-8■□□□□ 9.5
LIN28BQ6ZN17 BRAF-202ENST00000469930 1058 ntTSL 222.54■■□□□ 1.22e-7■□□□□ 9.5
LIN28BQ6ZN17 KRT19-202ENST00000455635 641 ntTSL 321.44■■□□□ 1.022e-7■□□□□ 9.5
LIN28BQ6ZN17 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.722e-7■□□□□ 9.5
LIN28BQ6ZN17 COPZ1-217ENST00000553009 567 ntTSL 314.84□□□□□ -0.032e-7■□□□□ 9.5
LIN28BQ6ZN17 COPZ1-216ENST00000552848 537 ntTSL 511.91□□□□□ -0.52e-7■□□□□ 9.5
LIN28BQ6ZN17 COPZ1-208ENST00000550027 553 ntTSL 1 (best)10.83□□□□□ -0.682e-7■□□□□ 9.5
LIN28BQ6ZN17 BRAF-205ENST00000497784 2336 ntTSL 510.29□□□□□ -0.762e-7■□□□□ 9.5
LIN28BQ6ZN17 COPZ1-211ENST00000551412 548 ntTSL 29.79□□□□□ -0.842e-7■□□□□ 9.5
LIN28BQ6ZN17 COPZ1-210ENST00000550713 548 ntTSL 29.07□□□□□ -0.962e-7■□□□□ 9.5
LIN28BQ6ZN17 COPZ1-203ENST00000548076 367 ntTSL 58.95□□□□□ -0.982e-7■□□□□ 9.5
LIN28BQ6ZN17 ATP6AP1-209ENST00000491569 2079 ntTSL 221.74■■□□□ 1.075e-13■□□□□ 9.4
LIN28BQ6ZN17 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.955e-13■□□□□ 9.4
LIN28BQ6ZN17 ATP6AP1-207ENST00000455205 4515 ntTSL 214.91□□□□□ -0.025e-13■□□□□ 9.4
LIN28BQ6ZN17 ATP6AP1-210ENST00000619046 2823 ntTSL 1 (best) BASIC11.92□□□□□ -0.55e-13■□□□□ 9.4
LIN28BQ6ZN17 CTSA-206ENST00000480961 513 ntTSL 222.63■■□□□ 1.212e-10■□□□□ 9.4
LIN28BQ6ZN17 CTSA-205ENST00000419493 606 ntTSL 210.91□□□□□ -0.662e-10■□□□□ 9.4
LIN28BQ6ZN17 GARS-203ENST00000454308 814 ntTSL 522.22■■□□□ 1.154e-9■□□□□ 9.4
LIN28BQ6ZN17 STT3B-206ENST00000463044 912 ntTSL 33.73□□□□□ -1.816e-8■□□□□ 9.4
LIN28BQ6ZN17 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.118e-9■□□□□ 9.4
LIN28BQ6ZN17 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.6□□□□□ -1.678e-9■□□□□ 9.4
LIN28BQ6ZN17 TARS-206ENST00000504698 633 ntTSL 38.59□□□□□ -1.031e-6■□□□□ 9.4
LIN28BQ6ZN17 CTSB-233ENST00000534636 633 ntTSL 421.15■□□□□ 0.984e-6■□□□□ 9.4
LIN28BQ6ZN17 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.32■□□□□ 0.684e-6■□□□□ 9.4
LIN28BQ6ZN17 CTSB-229ENST00000533572 975 ntTSL 319.15■□□□□ 0.664e-6■□□□□ 9.4
LIN28BQ6ZN17 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.78■□□□□ 0.284e-6■□□□□ 9.4
LIN28BQ6ZN17 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.244e-6■□□□□ 9.4
LIN28BQ6ZN17 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.234e-6■□□□□ 9.4
LIN28BQ6ZN17 CTSB-217ENST00000530296 561 ntTSL 415.62■□□□□ 0.094e-6■□□□□ 9.4
LIN28BQ6ZN17 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.114e-6■□□□□ 9.4
LIN28BQ6ZN17 ANGPTL8-202ENST00000587543 432 ntTSL 1 (best)13.89□□□□□ -0.194e-6■□□□□ 9.4
LIN28BQ6ZN17 SCAMP5-203ENST00000562212 3400 ntTSL 1 (best) BASIC12.39□□□□□ -0.434e-6■□□□□ 9.4
LIN28BQ6ZN17 CTSB-227ENST00000533110 399 ntTSL 510.94□□□□□ -0.664e-6■□□□□ 9.4
LIN28BQ6ZN17 SCAMP5-201ENST00000361900 3427 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.694e-6■□□□□ 9.4
LIN28BQ6ZN17 ABCB1-201ENST00000265724 4645 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.864e-6■□□□□ 9.4
LIN28BQ6ZN17 ABCB1-211ENST00000622132 4778 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.994e-6■□□□□ 9.4
LIN28BQ6ZN17 ABCB1-210ENST00000543898 4524 ntTSL 5 BASIC7.95□□□□□ -1.144e-6■□□□□ 9.4
LIN28BQ6ZN17 TFRC-215ENST00000491658 396 ntTSL 53.86□□□□□ -1.794e-6■□□□□ 9.4
LIN28BQ6ZN17 TFRC-210ENST00000465288 560 ntTSL 59.71□□□□□ -0.862e-7■□□□□ 9.4
LIN28BQ6ZN17 TFRC-212ENST00000477148 570 ntTSL 45.77□□□□□ -1.492e-7■□□□□ 9.4
LIN28BQ6ZN17 TMEM98-201ENST00000261713 826 ntTSL 328.8■■■□□ 2.21e-7■□□□□ 9.4
LIN28BQ6ZN17 TMEM98-204ENST00000439138 896 ntTSL 314.44□□□□□ -0.11e-7■□□□□ 9.4
LIN28BQ6ZN17 HSPA9-213ENST00000524109 1175 ntTSL 511.95□□□□□ -0.59e-9■□□□□ 9.4
LIN28BQ6ZN17 HSPA9-211ENST00000512328 482 ntTSL 33.83□□□□□ -1.89e-9■□□□□ 9.4
LIN28BQ6ZN17 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.463e-6■□□□□ 9.4
LIN28BQ6ZN17 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.433e-6■□□□□ 9.4
LIN28BQ6ZN17 CSNK2A1-210ENST00000619801 655 ntTSL 39.62□□□□□ -0.872e-9■□□□□ 9.4
LIN28BQ6ZN17 CSNK2A1-202ENST00000349736 4299 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.882e-9■□□□□ 9.4
LIN28BQ6ZN17 CSNK2A1-201ENST00000217244 4416 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.022e-9■□□□□ 9.4
LIN28BQ6ZN17 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.5□□□□□ -1.372e-9■□□□□ 9.4
LIN28BQ6ZN17 CAT-201ENST00000241052 2302 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.562e-6■□□□□ 9.4
LIN28BQ6ZN17 YWHAZ-222ENST00000523848 664 ntTSL 55.57□□□□□ -1.528e-7■□□□□ 9.3
LIN28BQ6ZN17 ATP1A1-205ENST00000440951 579 ntTSL 58.59□□□□□ -1.032e-6■□□□□ 9.3
LIN28BQ6ZN17 RPL35-203ENST00000487431 785 ntTSL 1 (best)24.64■■□□□ 1.543e-23■□□□□ 9.3
LIN28BQ6ZN17 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.183e-23■□□□□ 9.3
LIN28BQ6ZN17 RPL35-204ENST00000493018 692 ntTSL 314.45□□□□□ -0.13e-23■□□□□ 9.3
LIN28BQ6ZN17 RPL35-202ENST00000373570 493 ntTSL 3 BASIC10.69□□□□□ -0.73e-23■□□□□ 9.3
LIN28BQ6ZN17 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.773e-8■□□□□ 9.3
LIN28BQ6ZN17 RABL6-207ENST00000461992 763 ntTSL 1 (best)14.32□□□□□ -0.123e-8■□□□□ 9.3
LIN28BQ6ZN17 RABL6-206ENST00000436380 2547 ntAPPRIS ALT2 TSL 214.2□□□□□ -0.143e-8■□□□□ 9.3
LIN28BQ6ZN17 RABL6-209ENST00000466096 3949 ntTSL 1 (best)13.56□□□□□ -0.243e-8■□□□□ 9.3
LIN28BQ6ZN17 CTSB-211ENST00000526481 660 ntTSL 515.77■□□□□ 0.123e-17■□□□□ 9.3
LIN28BQ6ZN17 GLG1-209ENST00000565260 461 ntTSL 530.75■■■□□ 2.517e-9■□□□□ 9.3
LIN28BQ6ZN17 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.567e-9■□□□□ 9.3
LIN28BQ6ZN17 CD63-203ENST00000546457 607 ntTSL 215.64■□□□□ 0.098e-7■□□□□ 9.3
LIN28BQ6ZN17 SSR3-202ENST00000463503 596 ntTSL 4 BASIC13.04□□□□□ -0.328e-7■□□□□ 9.3
LIN28BQ6ZN17 SSR3-205ENST00000467789 1039 ntTSL 2 BASIC11.74□□□□□ -0.538e-7■□□□□ 9.3
LIN28BQ6ZN17 GNA12-202ENST00000407653 3785 ntTSL 2 BASIC11□□□□□ -0.657e-9■□□□□ 9.3
LIN28BQ6ZN17 GNA12-207ENST00000491117 3375 ntTSL 39.67□□□□□ -0.867e-9■□□□□ 9.3
LIN28BQ6ZN17 SSR3-201ENST00000265044 3716 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.873e-8■□□□□ 9.3
LIN28BQ6ZN17 GNA12-203ENST00000407904 3918 ntTSL 2 BASIC8.61□□□□□ -1.037e-9■□□□□ 9.3
LIN28BQ6ZN17 SSR3-203ENST00000464138 533 ntTSL 36.24□□□□□ -1.418e-7■□□□□ 9.3
Retrieved 100 of 21,972 protein–RNA pairs in 389.2 ms