Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.49□□□□□ -1.696e-8■□□□□ 9.6
LIN28BQ6ZN17 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.696e-8■□□□□ 9.6
LIN28BQ6ZN17 DSCR8-204ENST00000469658 437 ntTSL 24.49□□□□□ -1.696e-8■□□□□ 9.6
LIN28BQ6ZN17 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.83□□□□□ -2.126e-8■□□□□ 9.6
LIN28BQ6ZN17 NARS-205ENST00000587194 562 ntTSL 413.81□□□□□ -0.21e-6■□□□□ 9.6
LIN28BQ6ZN17 GARS-206ENST00000478124 1877 ntTSL 519.99■□□□□ 0.792e-9■□□□□ 9.6
LIN28BQ6ZN17 SERPINF1-203ENST00000570820 820 ntTSL 214.78□□□□□ -0.046e-10■□□□□ 9.6
LIN28BQ6ZN17 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.282e-6■□□□□ 9.6
LIN28BQ6ZN17 SOD2-212ENST00000540491 454 ntTSL 322.15■■□□□ 1.145e-7■□□□□ 9.5
LIN28BQ6ZN17 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.05■□□□□ 0.965e-7■□□□□ 9.5
LIN28BQ6ZN17 BAG6-257ENST00000462875 972 ntTSL 220.83■□□□□ 0.935e-7■□□□□ 9.5
LIN28BQ6ZN17 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.815e-7■□□□□ 9.5
LIN28BQ6ZN17 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.5■□□□□ 0.715e-7■□□□□ 9.5
LIN28BQ6ZN17 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.545e-7■□□□□ 9.5
LIN28BQ6ZN17 SOD2-209ENST00000535561 551 ntTSL 315.93■□□□□ 0.145e-7■□□□□ 9.5
LIN28BQ6ZN17 PMPCA-204ENST00000444897 2316 ntTSL 215.44■□□□□ 0.065e-7■□□□□ 9.5
LIN28BQ6ZN17 SOD2-205ENST00000444946 917 ntTSL 2 BASIC14.97□□□□□ -0.015e-7■□□□□ 9.5
LIN28BQ6ZN17 SOD2-204ENST00000401980 523 ntTSL 414.29□□□□□ -0.125e-7■□□□□ 9.5
LIN28BQ6ZN17 SOD2-208ENST00000535459 581 ntTSL 213.81□□□□□ -0.25e-7■□□□□ 9.5
LIN28BQ6ZN17 BAG6-249ENST00000441793 783 ntTSL 213.41□□□□□ -0.265e-7■□□□□ 9.5
LIN28BQ6ZN17 SOD2-214ENST00000545162 571 ntTSL 313.26□□□□□ -0.295e-7■□□□□ 9.5
LIN28BQ6ZN17 TMEM30A-203ENST00000475111 2791 ntTSL 1 (best) BASIC13.15□□□□□ -0.35e-7■□□□□ 9.5
LIN28BQ6ZN17 BAG6-237ENST00000375976 3644 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.455e-7■□□□□ 9.5
LIN28BQ6ZN17 BAG6-247ENST00000439687 3104 ntTSL 2 BASIC12.26□□□□□ -0.455e-7■□□□□ 9.5
LIN28BQ6ZN17 SOD2-210ENST00000537657 507 ntTSL 211.62□□□□□ -0.555e-7■□□□□ 9.5
LIN28BQ6ZN17 BAG6-235ENST00000362049 3626 ntTSL 2 BASIC11.26□□□□□ -0.615e-7■□□□□ 9.5
LIN28BQ6ZN17 BAG6-234ENST00000211379 3779 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.735e-7■□□□□ 9.5
LIN28BQ6ZN17 BAG6-236ENST00000375964 3815 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.755e-7■□□□□ 9.5
LIN28BQ6ZN17 SOD2-213ENST00000541573 573 ntTSL 45.27□□□□□ -1.575e-7■□□□□ 9.5
LIN28BQ6ZN17 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.31□□□□□ -1.725e-7■□□□□ 9.5
LIN28BQ6ZN17 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.3■□□□□ 0.844e-6■□□□□ 9.5
LIN28BQ6ZN17 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.844e-6■□□□□ 9.5
LIN28BQ6ZN17 NONO-214ENST00000490044 3215 ntTSL 27.1□□□□□ -1.277e-8■□□□□ 9.5
LIN28BQ6ZN17 RBM3-205ENST00000472897 501 ntTSL 517.35■□□□□ 0.378e-11■□□□□ 9.5
LIN28BQ6ZN17 RBM3-208ENST00000489344 724 ntTSL 216.26■□□□□ 0.198e-11■□□□□ 9.5
LIN28BQ6ZN17 LCMT1-209ENST00000574450 517 ntTSL 215.93■□□□□ 0.149e-8■□□□□ 9.5
LIN28BQ6ZN17 LCMT1-210ENST00000575396 449 ntTSL 315.93■□□□□ 0.149e-8■□□□□ 9.5
LIN28BQ6ZN17 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC15.65■□□□□ 0.19e-8■□□□□ 9.5
LIN28BQ6ZN17 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.089e-8■□□□□ 9.5
LIN28BQ6ZN17 LCMT1-201ENST00000380962 1529 ntTSL 213.3□□□□□ -0.289e-8■□□□□ 9.5
LIN28BQ6ZN17 LCMT1-204ENST00000564011 1168 ntTSL 512.15□□□□□ -0.469e-8■□□□□ 9.5
LIN28BQ6ZN17 LCMT1-207ENST00000572869 638 ntTSL 310.75□□□□□ -0.699e-8■□□□□ 9.5
LIN28BQ6ZN17 LCMT1-212ENST00000576625 640 ntTSL 510□□□□□ -0.819e-8■□□□□ 9.5
LIN28BQ6ZN17 SCAP-203ENST00000416208 1222 ntTSL 521.71■■□□□ 1.072e-6■□□□□ 9.5
LIN28BQ6ZN17 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.112e-6■□□□□ 9.5
LIN28BQ6ZN17 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.4■□□□□ 0.062e-6■□□□□ 9.5
LIN28BQ6ZN17 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.81□□□□□ -0.042e-6■□□□□ 9.5
LIN28BQ6ZN17 SCAP-207ENST00000441517 3748 ntTSL 214.81□□□□□ -0.042e-6■□□□□ 9.5
LIN28BQ6ZN17 SCAP-210ENST00000468965 570 ntTSL 214.35□□□□□ -0.112e-6■□□□□ 9.5
LIN28BQ6ZN17 SCAP-202ENST00000320017 3430 ntTSL 214.17□□□□□ -0.142e-6■□□□□ 9.5
LIN28BQ6ZN17 SERPINA11-201ENST00000334708 1476 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.121e-11■□□□□ 9.5
LIN28BQ6ZN17 ACTN4-207ENST00000495553 586 ntTSL 510.36□□□□□ -0.752e-6■□□□□ 9.5
LIN28BQ6ZN17 RNU6ATAC-201ENST00000408749 126 ntBASIC4.6□□□□□ -1.671e-323■□□□□ 9.5
LIN28BQ6ZN17 HMGCS1-206ENST00000511774 500 ntTSL 422.44■■□□□ 1.184e-9■□□□□ 9.5
LIN28BQ6ZN17 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.25■□□□□ 0.514e-9■□□□□ 9.5
LIN28BQ6ZN17 HMGCS1-203ENST00000507004 950 ntTSL 216.42■□□□□ 0.224e-9■□□□□ 9.5
LIN28BQ6ZN17 ANXA4-204ENST00000460439 543 ntTSL 415.29■□□□□ 0.044e-9■□□□□ 9.5
LIN28BQ6ZN17 ANXA4-211ENST00000487351 552 ntTSL 214.56□□□□□ -0.084e-9■□□□□ 9.5
LIN28BQ6ZN17 ANXA4-212ENST00000635311 1492 ntTSL 214.43□□□□□ -0.14e-9■□□□□ 9.5
LIN28BQ6ZN17 ANXA4-205ENST00000460942 576 ntTSL 513.59□□□□□ -0.234e-9■□□□□ 9.5
LIN28BQ6ZN17 HMGCS1-204ENST00000507293 708 ntTSL 1 (best)13.29□□□□□ -0.284e-9■□□□□ 9.5
LIN28BQ6ZN17 ANXA4-201ENST00000394295 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.54e-9■□□□□ 9.5
LIN28BQ6ZN17 ANXA4-209ENST00000477632 3949 ntTSL 1 (best)8.5□□□□□ -1.054e-9■□□□□ 9.5
LIN28BQ6ZN17 GNAS-256ENST00000603546 573 ntTSL 531.19■■■□□ 2.582e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-244ENST00000485673 715 ntTSL 531.17■■■□□ 2.582e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-228ENST00000469431 702 ntTSL 529.82■■■□□ 2.362e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-235ENST00000478585 543 ntTSL 229.82■■■□□ 2.362e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-257ENST00000604005 693 ntTSL 329.82■■■□□ 2.362e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-229ENST00000470512 913 ntTSL 528.64■■■□□ 2.182e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-237ENST00000480232 893 ntTSL 528.22■■■□□ 2.112e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-233ENST00000476935 828 ntTSL 326.95■■□□□ 1.92e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC26.73■■□□□ 1.872e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC26.73■■□□□ 1.872e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.61■■□□□ 1.852e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-234ENST00000477931 1663 ntTSL 1 (best)25.98■■□□□ 1.752e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-248ENST00000488652 953 ntTSL 524.17■■□□□ 1.462e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.432e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-238ENST00000480975 1534 ntTSL 521.51■■□□□ 1.032e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-226ENST00000467321 733 ntTSL 521.51■■□□□ 1.032e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-230ENST00000472183 911 ntTSL 320.62■□□□□ 0.892e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-223ENST00000464788 583 ntTSL 217.5■□□□□ 0.392e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-241ENST00000482112 704 ntTSL 316.57■□□□□ 0.242e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-249ENST00000490374 675 ntTSL 316.49■□□□□ 0.232e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-206ENST00000349036 581 ntTSL 515.26■□□□□ 0.032e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC13.54□□□□□ -0.242e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-239ENST00000481039 756 ntTSL 513.34□□□□□ -0.272e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-222ENST00000464624 3764 ntTSL 513.25□□□□□ -0.292e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-247ENST00000488546 897 ntTSL 513.11□□□□□ -0.312e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-216ENST00000419558 729 ntTSL 312.13□□□□□ -0.472e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-245ENST00000487862 1782 ntTSL 212.05□□□□□ -0.482e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-214ENST00000371100 4029 ntTSL 5 BASIC11.62□□□□□ -0.552e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-218ENST00000450130 595 ntTSL 511.07□□□□□ -0.642e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-208ENST00000371075 2551 ntTSL 1 (best) BASIC10.17□□□□□ -0.782e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-204ENST00000313949 2578 ntTSL 1 (best) BASIC10.16□□□□□ -0.782e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-227ENST00000468895 583 ntTSL 39.82□□□□□ -0.842e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-251ENST00000492907 790 ntTSL 39.82□□□□□ -0.842e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-225ENST00000467227 543 ntTSL 38.06□□□□□ -1.122e-6■□□□□ 9.5
LIN28BQ6ZN17 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.71□□□□□ -1.52e-6■□□□□ 9.5
LIN28BQ6ZN17 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.732e-11■□□□□ 9.5
LIN28BQ6ZN17 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC23.96■■□□□ 1.432e-11■□□□□ 9.5
Retrieved 100 of 21,972 protein–RNA pairs in 249 ms