Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC30.19■■■□□ 2.42
SMC4Q9NTJ3 PVT1_1.1-201ENST00000615125 194 ntBASIC30.19■■■□□ 2.42
SMC4Q9NTJ3 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
SMC4Q9NTJ3 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC30.18■■■□□ 2.42
SMC4Q9NTJ3 MIR6089-201ENST00000616698 64 ntBASIC30.18■■■□□ 2.42
SMC4Q9NTJ3 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SMC4Q9NTJ3 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC30.18■■■□□ 2.42
SMC4Q9NTJ3 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
SMC4Q9NTJ3 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
SMC4Q9NTJ3 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SMC4Q9NTJ3 BEX3-202ENST00000372634 753 ntTSL 2 BASIC30.17■■■□□ 2.42
SMC4Q9NTJ3 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SMC4Q9NTJ3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
SMC4Q9NTJ3 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC30.16■■■□□ 2.42
SMC4Q9NTJ3 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC30.16■■■□□ 2.42
SMC4Q9NTJ3 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
SMC4Q9NTJ3 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
SMC4Q9NTJ3 AC019171.1-201ENST00000601251 1056 ntBASIC30.16■■■□□ 2.42
SMC4Q9NTJ3 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC30.15■■■□□ 2.42
SMC4Q9NTJ3 AL592295.1-201ENST00000400984 884 ntBASIC30.15■■■□□ 2.42
SMC4Q9NTJ3 MTX2-204ENST00000443241 799 ntTSL 3 BASIC30.15■■■□□ 2.42
SMC4Q9NTJ3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
SMC4Q9NTJ3 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
SMC4Q9NTJ3 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SMC4Q9NTJ3 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
SMC4Q9NTJ3 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SMC4Q9NTJ3 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC30.15■■■□□ 2.42
SMC4Q9NTJ3 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SMC4Q9NTJ3 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
SMC4Q9NTJ3 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC30.14■■■□□ 2.42
SMC4Q9NTJ3 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SMC4Q9NTJ3 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
SMC4Q9NTJ3 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC30.14■■■□□ 2.42
SMC4Q9NTJ3 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC30.14■■■□□ 2.41
SMC4Q9NTJ3 AP003733.4-201ENST00000623785 1697 ntBASIC30.14■■■□□ 2.41
SMC4Q9NTJ3 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.41
SMC4Q9NTJ3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
SMC4Q9NTJ3 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC30.13■■■□□ 2.41
SMC4Q9NTJ3 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
SMC4Q9NTJ3 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SMC4Q9NTJ3 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SMC4Q9NTJ3 AC074183.2-201ENST00000623112 922 ntBASIC30.13■■■□□ 2.41
SMC4Q9NTJ3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SMC4Q9NTJ3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC30.13■■■□□ 2.41
SMC4Q9NTJ3 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
SMC4Q9NTJ3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC30.12■■■□□ 2.41
SMC4Q9NTJ3 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SMC4Q9NTJ3 IDNK-201ENST00000376417 511 ntTSL 5 BASIC30.12■■■□□ 2.41
SMC4Q9NTJ3 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SMC4Q9NTJ3 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
SMC4Q9NTJ3 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC30.12■■■□□ 2.41
SMC4Q9NTJ3 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC30.12■■■□□ 2.41
SMC4Q9NTJ3 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC30.12■■■□□ 2.41
SMC4Q9NTJ3 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC30.12■■■□□ 2.41
SMC4Q9NTJ3 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SMC4Q9NTJ3 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SMC4Q9NTJ3 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SMC4Q9NTJ3 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SMC4Q9NTJ3 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC30.11■■■□□ 2.41
SMC4Q9NTJ3 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SMC4Q9NTJ3 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
SMC4Q9NTJ3 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SMC4Q9NTJ3 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
SMC4Q9NTJ3 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC30.1■■■□□ 2.41
SMC4Q9NTJ3 AC135731.1-201ENST00000569415 2548 ntBASIC30.1■■■□□ 2.41
SMC4Q9NTJ3 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SMC4Q9NTJ3 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC30.08■■■□□ 2.41
SMC4Q9NTJ3 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC30.08■■■□□ 2.41
SMC4Q9NTJ3 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
SMC4Q9NTJ3 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC30.08■■■□□ 2.41
SMC4Q9NTJ3 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC30.08■■■□□ 2.41
SMC4Q9NTJ3 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC30.08■■■□□ 2.41
SMC4Q9NTJ3 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
SMC4Q9NTJ3 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC30.08■■■□□ 2.41
SMC4Q9NTJ3 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC30.08■■■□□ 2.41
SMC4Q9NTJ3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC30.08■■■□□ 2.41
SMC4Q9NTJ3 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
SMC4Q9NTJ3 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SMC4Q9NTJ3 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC30.07■■■□□ 2.4
SMC4Q9NTJ3 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SMC4Q9NTJ3 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SMC4Q9NTJ3 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC30.07■■■□□ 2.4
SMC4Q9NTJ3 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC30.07■■■□□ 2.4
SMC4Q9NTJ3 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SMC4Q9NTJ3 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SMC4Q9NTJ3 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
SMC4Q9NTJ3 AL139125.2-201ENST00000623134 1869 ntBASIC30.06■■■□□ 2.4
SMC4Q9NTJ3 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC30.06■■■□□ 2.4
SMC4Q9NTJ3 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC30.06■■■□□ 2.4
SMC4Q9NTJ3 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC30.06■■■□□ 2.4
SMC4Q9NTJ3 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC30.06■■■□□ 2.4
SMC4Q9NTJ3 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC30.06■■■□□ 2.4
SMC4Q9NTJ3 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SMC4Q9NTJ3 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
SMC4Q9NTJ3 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SMC4Q9NTJ3 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SMC4Q9NTJ3 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
SMC4Q9NTJ3 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.05■■■□□ 2.4
SMC4Q9NTJ3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SMC4Q9NTJ3 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms