Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
DDX4Q9NQI0 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC28.06■■■□□ 2.08
DDX4Q9NQI0 AC010501.1-201ENST00000606270 1962 ntBASIC28.06■■■□□ 2.08
DDX4Q9NQI0 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
DDX4Q9NQI0 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC28.06■■■□□ 2.08
DDX4Q9NQI0 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
DDX4Q9NQI0 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC28.06■■■□□ 2.08
DDX4Q9NQI0 AC131281.2-201ENST00000520478 145 ntBASIC28.06■■■□□ 2.08
DDX4Q9NQI0 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
DDX4Q9NQI0 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
DDX4Q9NQI0 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
DDX4Q9NQI0 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
DDX4Q9NQI0 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
DDX4Q9NQI0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC28.05■■■□□ 2.08
DDX4Q9NQI0 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC28.05■■■□□ 2.08
DDX4Q9NQI0 AL117332.1-201ENST00000622628 974 ntBASIC28.05■■■□□ 2.08
DDX4Q9NQI0 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
DDX4Q9NQI0 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
DDX4Q9NQI0 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC28.04■■■□□ 2.08
DDX4Q9NQI0 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
DDX4Q9NQI0 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC28.03■■■□□ 2.08
DDX4Q9NQI0 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC28.03■■■□□ 2.08
DDX4Q9NQI0 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
DDX4Q9NQI0 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
DDX4Q9NQI0 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
DDX4Q9NQI0 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 RPP21-222ENST00000433076 577 ntTSL 2 BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 CLTA-210ENST00000540080 989 ntTSL 2 BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 MTDHP2-201ENST00000601468 714 ntBASIC28.02■■■□□ 2.08
DDX4Q9NQI0 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
DDX4Q9NQI0 AC090877.2-201ENST00000558441 1738 ntBASIC28.01■■■□□ 2.07
DDX4Q9NQI0 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
DDX4Q9NQI0 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC28.01■■■□□ 2.07
DDX4Q9NQI0 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC28.01■■■□□ 2.07
DDX4Q9NQI0 SRR-208ENST00000576848 588 ntTSL 4 BASIC28.01■■■□□ 2.07
DDX4Q9NQI0 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC28.01■■■□□ 2.07
DDX4Q9NQI0 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC28.01■■■□□ 2.07
DDX4Q9NQI0 MIR6724-1-201ENST00000616420 92 ntBASIC28.01■■■□□ 2.07
DDX4Q9NQI0 MIR6724-2-201ENST00000616483 92 ntBASIC28.01■■■□□ 2.07
DDX4Q9NQI0 MIR6724-4-201ENST00000617390 92 ntBASIC28.01■■■□□ 2.07
DDX4Q9NQI0 MIR6724-3-201ENST00000622482 92 ntBASIC28.01■■■□□ 2.07
DDX4Q9NQI0 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
DDX4Q9NQI0 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
DDX4Q9NQI0 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC28■■■□□ 2.07
DDX4Q9NQI0 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC28■■■□□ 2.07
DDX4Q9NQI0 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC28■■■□□ 2.07
DDX4Q9NQI0 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC28■■■□□ 2.07
DDX4Q9NQI0 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC28■■■□□ 2.07
DDX4Q9NQI0 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
DDX4Q9NQI0 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC28■■■□□ 2.07
DDX4Q9NQI0 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
DDX4Q9NQI0 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC27.99■■■□□ 2.07
DDX4Q9NQI0 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC27.99■■■□□ 2.07
DDX4Q9NQI0 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC27.99■■■□□ 2.07
DDX4Q9NQI0 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC27.99■■■□□ 2.07
DDX4Q9NQI0 MIR3621-201ENST00000580529 85 ntBASIC27.99■■■□□ 2.07
DDX4Q9NQI0 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
DDX4Q9NQI0 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC27.99■■■□□ 2.07
DDX4Q9NQI0 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC27.99■■■□□ 2.07
DDX4Q9NQI0 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
DDX4Q9NQI0 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
DDX4Q9NQI0 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC27.98■■■□□ 2.07
DDX4Q9NQI0 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
DDX4Q9NQI0 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
DDX4Q9NQI0 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC27.98■■■□□ 2.07
DDX4Q9NQI0 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC27.97■■■□□ 2.07
DDX4Q9NQI0 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC27.97■■■□□ 2.07
DDX4Q9NQI0 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC27.97■■■□□ 2.07
DDX4Q9NQI0 EXOG-217ENST00000630638 197 ntTSL 5 BASIC27.97■■■□□ 2.07
DDX4Q9NQI0 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC27.97■■■□□ 2.07
DDX4Q9NQI0 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
DDX4Q9NQI0 AC092803.2-201ENST00000564287 1899 ntBASIC27.97■■■□□ 2.07
DDX4Q9NQI0 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC27.97■■■□□ 2.07
DDX4Q9NQI0 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC27.96■■■□□ 2.07
DDX4Q9NQI0 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
DDX4Q9NQI0 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
DDX4Q9NQI0 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC27.95■■■□□ 2.06
DDX4Q9NQI0 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC27.95■■■□□ 2.06
DDX4Q9NQI0 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC27.95■■■□□ 2.06
DDX4Q9NQI0 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC27.94■■■□□ 2.06
DDX4Q9NQI0 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
DDX4Q9NQI0 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC27.94■■■□□ 2.06
DDX4Q9NQI0 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC27.93■■■□□ 2.06
DDX4Q9NQI0 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
DDX4Q9NQI0 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC27.93■■■□□ 2.06
DDX4Q9NQI0 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
DDX4Q9NQI0 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
DDX4Q9NQI0 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC27.92■■■□□ 2.06
DDX4Q9NQI0 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
DDX4Q9NQI0 QDPR-206ENST00000508623 601 ntTSL 3 BASIC27.92■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms