Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps28Q9D1C8 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps28Q9D1C8 Dmtn-209ENSMUST00000228295 2572 ntBASIC21.69■■□□□ 1.06
Vps28Q9D1C8 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps28Q9D1C8 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps28Q9D1C8 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vps28Q9D1C8 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Vps28Q9D1C8 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vps28Q9D1C8 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vps28Q9D1C8 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC21.68■■□□□ 1.06
Vps28Q9D1C8 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vps28Q9D1C8 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vps28Q9D1C8 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps28Q9D1C8 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Vps28Q9D1C8 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps28Q9D1C8 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps28Q9D1C8 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps28Q9D1C8 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps28Q9D1C8 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps28Q9D1C8 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps28Q9D1C8 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vps28Q9D1C8 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC21.66■■□□□ 1.06
Vps28Q9D1C8 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC21.66■■□□□ 1.06
Vps28Q9D1C8 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Vps28Q9D1C8 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vps28Q9D1C8 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps28Q9D1C8 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps28Q9D1C8 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps28Q9D1C8 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps28Q9D1C8 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
Vps28Q9D1C8 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps28Q9D1C8 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Vps28Q9D1C8 Gm8093-201ENSMUST00000128935 1892 ntBASIC21.64■■□□□ 1.06
Vps28Q9D1C8 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Vps28Q9D1C8 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Vps28Q9D1C8 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps28Q9D1C8 Rps24-207ENSMUST00000224568 714 ntBASIC21.64■■□□□ 1.05
Vps28Q9D1C8 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps28Q9D1C8 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps28Q9D1C8 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps28Q9D1C8 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps28Q9D1C8 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Vps28Q9D1C8 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
Vps28Q9D1C8 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps28Q9D1C8 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps28Q9D1C8 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps28Q9D1C8 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps28Q9D1C8 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps28Q9D1C8 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps28Q9D1C8 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC21.62■■□□□ 1.05
Vps28Q9D1C8 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps28Q9D1C8 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps28Q9D1C8 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps28Q9D1C8 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps28Q9D1C8 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps28Q9D1C8 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC21.61■■□□□ 1.05
Vps28Q9D1C8 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC21.61■■□□□ 1.05
Vps28Q9D1C8 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.61■■□□□ 1.05
Vps28Q9D1C8 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps28Q9D1C8 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps28Q9D1C8 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps28Q9D1C8 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps28Q9D1C8 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps28Q9D1C8 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Vps28Q9D1C8 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC21.6■■□□□ 1.05
Vps28Q9D1C8 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Vps28Q9D1C8 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Vps28Q9D1C8 Gm26766-202ENSMUST00000227544 2347 ntBASIC21.6■■□□□ 1.05
Vps28Q9D1C8 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC21.6■■□□□ 1.05
Vps28Q9D1C8 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Vps28Q9D1C8 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Vps28Q9D1C8 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC21.6■■□□□ 1.05
Vps28Q9D1C8 AC115037.1-201ENSMUST00000223391 2173 ntBASIC21.6■■□□□ 1.05
Vps28Q9D1C8 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Vps28Q9D1C8 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vps28Q9D1C8 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vps28Q9D1C8 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vps28Q9D1C8 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vps28Q9D1C8 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC21.59■■□□□ 1.05
Vps28Q9D1C8 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vps28Q9D1C8 Gm9959-201ENSMUST00000068277 390 ntBASIC21.59■■□□□ 1.05
Vps28Q9D1C8 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
Vps28Q9D1C8 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Vps28Q9D1C8 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.59■■□□□ 1.05
Vps28Q9D1C8 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Vps28Q9D1C8 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC21.58■■□□□ 1.05
Vps28Q9D1C8 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC21.58■■□□□ 1.05
Vps28Q9D1C8 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Vps28Q9D1C8 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC21.58■■□□□ 1.05
Vps28Q9D1C8 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
Vps28Q9D1C8 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Vps28Q9D1C8 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC21.58■■□□□ 1.04
Vps28Q9D1C8 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Vps28Q9D1C8 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Vps28Q9D1C8 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
Vps28Q9D1C8 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Vps28Q9D1C8 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Vps28Q9D1C8 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC21.57■■□□□ 1.04
Vps28Q9D1C8 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Vps28Q9D1C8 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms