Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA3Q8IX90 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.7■□□□□ 0.9
SKA3Q8IX90 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA3Q8IX90 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA3Q8IX90 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA3Q8IX90 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA3Q8IX90 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA3Q8IX90 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA3Q8IX90 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA3Q8IX90 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SKA3Q8IX90 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SKA3Q8IX90 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA3Q8IX90 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA3Q8IX90 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SKA3Q8IX90 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.68■□□□□ 0.9
SKA3Q8IX90 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.68■□□□□ 0.9
SKA3Q8IX90 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.68■□□□□ 0.9
SKA3Q8IX90 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.68■□□□□ 0.9
SKA3Q8IX90 AC074183.2-201ENST00000623112 922 ntBASIC20.68■□□□□ 0.9
SKA3Q8IX90 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SKA3Q8IX90 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SKA3Q8IX90 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA3Q8IX90 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA3Q8IX90 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA3Q8IX90 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA3Q8IX90 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA3Q8IX90 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA3Q8IX90 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA3Q8IX90 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA3Q8IX90 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA3Q8IX90 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SKA3Q8IX90 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.67■□□□□ 0.9
SKA3Q8IX90 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA3Q8IX90 AC010980.1-201ENST00000587192 1142 ntBASIC20.67■□□□□ 0.9
SKA3Q8IX90 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SKA3Q8IX90 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA3Q8IX90 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SKA3Q8IX90 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SKA3Q8IX90 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SKA3Q8IX90 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA3Q8IX90 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA3Q8IX90 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA3Q8IX90 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA3Q8IX90 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA3Q8IX90 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA3Q8IX90 AC019171.1-201ENST00000601251 1056 ntBASIC20.66■□□□□ 0.9
SKA3Q8IX90 PVT1_1.1-201ENST00000615125 194 ntBASIC20.66■□□□□ 0.9
SKA3Q8IX90 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA3Q8IX90 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SKA3Q8IX90 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SKA3Q8IX90 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SKA3Q8IX90 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SKA3Q8IX90 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.65■□□□□ 0.9
SKA3Q8IX90 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.65■□□□□ 0.9
SKA3Q8IX90 AC142381.3-201ENST00000568208 1670 ntBASIC20.64■□□□□ 0.9
SKA3Q8IX90 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.64■□□□□ 0.9
SKA3Q8IX90 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.64■□□□□ 0.89
SKA3Q8IX90 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.64■□□□□ 0.89
SKA3Q8IX90 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.64■□□□□ 0.89
SKA3Q8IX90 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA3Q8IX90 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.89
SKA3Q8IX90 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
SKA3Q8IX90 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA3Q8IX90 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.64■□□□□ 0.89
SKA3Q8IX90 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA3Q8IX90 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA3Q8IX90 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA3Q8IX90 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.64■□□□□ 0.89
SKA3Q8IX90 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.64■□□□□ 0.89
SKA3Q8IX90 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA3Q8IX90 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA3Q8IX90 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.64■□□□□ 0.89
SKA3Q8IX90 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
SKA3Q8IX90 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA3Q8IX90 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA3Q8IX90 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SKA3Q8IX90 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
SKA3Q8IX90 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA3Q8IX90 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.63■□□□□ 0.89
SKA3Q8IX90 AL592295.1-201ENST00000400984 884 ntBASIC20.63■□□□□ 0.89
SKA3Q8IX90 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.63■□□□□ 0.89
SKA3Q8IX90 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SKA3Q8IX90 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA3Q8IX90 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA3Q8IX90 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SKA3Q8IX90 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA3Q8IX90 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SKA3Q8IX90 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA3Q8IX90 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA3Q8IX90 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SKA3Q8IX90 AC093323.1-202ENST00000635031 2045 ntBASIC20.62■□□□□ 0.89
SKA3Q8IX90 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA3Q8IX90 AC138932.3-201ENST00000567634 1902 ntBASIC20.62■□□□□ 0.89
SKA3Q8IX90 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.62■□□□□ 0.89
SKA3Q8IX90 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA3Q8IX90 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SKA3Q8IX90 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SKA3Q8IX90 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SKA3Q8IX90 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.61■□□□□ 0.89
SKA3Q8IX90 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms