Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Cdh11P55288 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdh11P55288 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdh11P55288 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
Cdh11P55288 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cdh11P55288 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.16■□□□□ 0.66
Cdh11P55288 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdh11P55288 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdh11P55288 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Cdh11P55288 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdh11P55288 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdh11P55288 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdh11P55288 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Cdh11P55288 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
Cdh11P55288 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Cdh11P55288 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Cdh11P55288 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.14■□□□□ 0.66
Cdh11P55288 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cdh11P55288 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cdh11P55288 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Cdh11P55288 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Cdh11P55288 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Cdh11P55288 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cdh11P55288 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cdh11P55288 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Cdh11P55288 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cdh11P55288 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cdh11P55288 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdh11P55288 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdh11P55288 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdh11P55288 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdh11P55288 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdh11P55288 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Cdh11P55288 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Cdh11P55288 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.12■□□□□ 0.65
Cdh11P55288 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdh11P55288 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
Cdh11P55288 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Cdh11P55288 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Cdh11P55288 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Cdh11P55288 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cdh11P55288 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
Cdh11P55288 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cdh11P55288 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Cdh11P55288 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cdh11P55288 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC19.11■□□□□ 0.65
Cdh11P55288 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Cdh11P55288 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.11■□□□□ 0.65
Cdh11P55288 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cdh11P55288 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Cdh11P55288 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cdh11P55288 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cdh11P55288 Gm5921-201ENSMUST00000075898 882 ntBASIC19.1■□□□□ 0.65
Cdh11P55288 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Cdh11P55288 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cdh11P55288 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cdh11P55288 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cdh11P55288 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cdh11P55288 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdh11P55288 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdh11P55288 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdh11P55288 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdh11P55288 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdh11P55288 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Cdh11P55288 Notumos-201ENSMUST00000151998 2659 ntBASIC19.09■□□□□ 0.65
Cdh11P55288 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdh11P55288 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdh11P55288 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdh11P55288 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Cdh11P55288 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Cdh11P55288 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cdh11P55288 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Cdh11P55288 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cdh11P55288 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
Cdh11P55288 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cdh11P55288 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdh11P55288 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdh11P55288 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdh11P55288 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC19.07■□□□□ 0.64
Cdh11P55288 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Cdh11P55288 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdh11P55288 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdh11P55288 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdh11P55288 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Cdh11P55288 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdh11P55288 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Cdh11P55288 Gm7199-201ENSMUST00000118327 1485 ntBASIC19.06■□□□□ 0.64
Cdh11P55288 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Cdh11P55288 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdh11P55288 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdh11P55288 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Cdh11P55288 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdh11P55288 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC19.06■□□□□ 0.64
Cdh11P55288 Hsf1-207ENSMUST00000228371 2102 ntBASIC19.06■□□□□ 0.64
Cdh11P55288 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.05■□□□□ 0.64
Cdh11P55288 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdh11P55288 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdh11P55288 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdh11P55288 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdh11P55288 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 70.1 ms