Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC27.46■■□□□ 1.99
HMGCS2P54868 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC27.46■■□□□ 1.99
HMGCS2P54868 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC27.46■■□□□ 1.99
HMGCS2P54868 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC27.45■■□□□ 1.99
HMGCS2P54868 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
HMGCS2P54868 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
HMGCS2P54868 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC27.45■■□□□ 1.98
HMGCS2P54868 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC27.45■■□□□ 1.98
HMGCS2P54868 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
HMGCS2P54868 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
HMGCS2P54868 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC27.44■■□□□ 1.98
HMGCS2P54868 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
HMGCS2P54868 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC27.44■■□□□ 1.98
HMGCS2P54868 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC27.44■■□□□ 1.98
HMGCS2P54868 RASSF1-AS1-201ENST00000629828 790 ntBASIC27.44■■□□□ 1.98
HMGCS2P54868 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC27.44■■□□□ 1.98
HMGCS2P54868 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC27.44■■□□□ 1.98
HMGCS2P54868 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
HMGCS2P54868 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
HMGCS2P54868 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC27.43■■□□□ 1.98
HMGCS2P54868 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC27.43■■□□□ 1.98
HMGCS2P54868 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
HMGCS2P54868 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC27.42■■□□□ 1.98
HMGCS2P54868 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC27.42■■□□□ 1.98
HMGCS2P54868 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
HMGCS2P54868 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
HMGCS2P54868 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC27.42■■□□□ 1.98
HMGCS2P54868 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC27.41■■□□□ 1.98
HMGCS2P54868 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
HMGCS2P54868 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC27.41■■□□□ 1.98
HMGCS2P54868 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
HMGCS2P54868 AC005837.3-201ENST00000612163 286 ntBASIC27.4■■□□□ 1.98
HMGCS2P54868 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC27.4■■□□□ 1.98
HMGCS2P54868 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
HMGCS2P54868 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC27.39■■□□□ 1.98
HMGCS2P54868 TFPT-201ENST00000391757 774 ntTSL 5 BASIC27.39■■□□□ 1.98
HMGCS2P54868 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.98
HMGCS2P54868 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
HMGCS2P54868 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC27.38■■□□□ 1.97
HMGCS2P54868 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
HMGCS2P54868 AC090877.2-201ENST00000558441 1738 ntBASIC27.38■■□□□ 1.97
HMGCS2P54868 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
HMGCS2P54868 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC27.37■■□□□ 1.97
HMGCS2P54868 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
HMGCS2P54868 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC27.37■■□□□ 1.97
HMGCS2P54868 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
HMGCS2P54868 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
HMGCS2P54868 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
HMGCS2P54868 SNX5-217ENST00000606557 1087 ntBASIC27.37■■□□□ 1.97
HMGCS2P54868 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
HMGCS2P54868 CLTA-206ENST00000466396 695 ntTSL 2 BASIC27.36■■□□□ 1.97
HMGCS2P54868 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC27.36■■□□□ 1.97
HMGCS2P54868 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
HMGCS2P54868 AC096887.2-201ENST00000623443 1957 ntBASIC27.36■■□□□ 1.97
HMGCS2P54868 ERN1-208ENST00000606895 2068 ntBASIC27.36■■□□□ 1.97
HMGCS2P54868 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
HMGCS2P54868 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
HMGCS2P54868 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
HMGCS2P54868 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
HMGCS2P54868 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC27.34■■□□□ 1.97
HMGCS2P54868 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
HMGCS2P54868 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
HMGCS2P54868 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
HMGCS2P54868 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC27.33■■□□□ 1.97
HMGCS2P54868 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
HMGCS2P54868 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC27.33■■□□□ 1.96
HMGCS2P54868 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
HMGCS2P54868 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
HMGCS2P54868 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
HMGCS2P54868 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC27.32■■□□□ 1.96
HMGCS2P54868 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
HMGCS2P54868 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC27.32■■□□□ 1.96
HMGCS2P54868 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
HMGCS2P54868 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
HMGCS2P54868 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
HMGCS2P54868 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC27.31■■□□□ 1.96
HMGCS2P54868 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
HMGCS2P54868 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC27.31■■□□□ 1.96
HMGCS2P54868 AC097639.1-201ENST00000565519 1891 ntBASIC27.3■■□□□ 1.96
HMGCS2P54868 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
HMGCS2P54868 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC27.3■■□□□ 1.96
HMGCS2P54868 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC27.3■■□□□ 1.96
HMGCS2P54868 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC27.3■■□□□ 1.96
HMGCS2P54868 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
HMGCS2P54868 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
HMGCS2P54868 AC133561.4-201ENST00000566112 224 ntBASIC27.29■■□□□ 1.96
HMGCS2P54868 MIR6722-201ENST00000617286 78 ntBASIC27.29■■□□□ 1.96
HMGCS2P54868 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
HMGCS2P54868 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC27.29■■□□□ 1.96
HMGCS2P54868 PKM-203ENST00000389093 2279 ntTSL 5 BASIC27.29■■□□□ 1.96
HMGCS2P54868 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
HMGCS2P54868 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
HMGCS2P54868 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC27.28■■□□□ 1.96
HMGCS2P54868 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
HMGCS2P54868 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
HMGCS2P54868 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC27.28■■□□□ 1.96
HMGCS2P54868 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
HMGCS2P54868 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC27.27■■□□□ 1.96
HMGCS2P54868 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC27.27■■□□□ 1.96
HMGCS2P54868 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC27.27■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms