Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC12P31275 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXC12P31275 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXC12P31275 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC12P31275 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC12P31275 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC12P31275 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
HOXC12P31275 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC12P31275 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC12P31275 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC12P31275 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC12P31275 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC12P31275 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.74■□□□□ 0.91
HOXC12P31275 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.74■□□□□ 0.91
HOXC12P31275 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.74■□□□□ 0.91
HOXC12P31275 DUSP8P4-201ENST00000399538 1761 ntBASIC20.74■□□□□ 0.91
HOXC12P31275 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC12P31275 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC12P31275 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
HOXC12P31275 AC091060.1-201ENST00000623524 1766 ntBASIC20.73■□□□□ 0.91
HOXC12P31275 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC12P31275 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
HOXC12P31275 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
HOXC12P31275 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.73■□□□□ 0.91
HOXC12P31275 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
HOXC12P31275 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.72■□□□□ 0.91
HOXC12P31275 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC12P31275 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC12P31275 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC12P31275 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC12P31275 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.71■□□□□ 0.91
HOXC12P31275 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.71■□□□□ 0.91
HOXC12P31275 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.71■□□□□ 0.91
HOXC12P31275 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC12P31275 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.71■□□□□ 0.91
HOXC12P31275 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC12P31275 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
HOXC12P31275 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC12P31275 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC12P31275 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC12P31275 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.7■□□□□ 0.9
HOXC12P31275 FOXO3B-201ENST00000395675 1928 ntBASIC20.7■□□□□ 0.9
HOXC12P31275 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.7■□□□□ 0.9
HOXC12P31275 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.7■□□□□ 0.9
HOXC12P31275 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC12P31275 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC12P31275 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC12P31275 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC12P31275 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXC12P31275 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC12P31275 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
HOXC12P31275 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HOXC12P31275 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXC12P31275 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXC12P31275 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.69■□□□□ 0.9
HOXC12P31275 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXC12P31275 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.69■□□□□ 0.9
HOXC12P31275 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC12P31275 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC12P31275 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXC12P31275 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXC12P31275 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC12P31275 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC12P31275 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
HOXC12P31275 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HOXC12P31275 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.68■□□□□ 0.9
HOXC12P31275 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC12P31275 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC12P31275 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXC12P31275 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC12P31275 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
HOXC12P31275 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC12P31275 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC12P31275 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
HOXC12P31275 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC12P31275 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC12P31275 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC12P31275 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC12P31275 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
HOXC12P31275 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC12P31275 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC12P31275 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
HOXC12P31275 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HOXC12P31275 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXC12P31275 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC12P31275 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXC12P31275 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HOXC12P31275 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXC12P31275 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXC12P31275 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
HOXC12P31275 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXC12P31275 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
HOXC12P31275 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC12P31275 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC12P31275 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
HOXC12P31275 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC12P31275 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.64■□□□□ 0.89
HOXC12P31275 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC12P31275 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC12P31275 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms