Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMS3P0CW19 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMS3P0CW19 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
LIMS3P0CW19 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMS3P0CW19 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMS3P0CW19 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMS3P0CW19 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
LIMS3P0CW19 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMS3P0CW19 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMS3P0CW19 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMS3P0CW19 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMS3P0CW19 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMS3P0CW19 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
LIMS3P0CW19 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMS3P0CW19 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.86■□□□□ 0.93
LIMS3P0CW19 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.86■□□□□ 0.93
LIMS3P0CW19 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.86■□□□□ 0.93
LIMS3P0CW19 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMS3P0CW19 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMS3P0CW19 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIMS3P0CW19 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMS3P0CW19 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIMS3P0CW19 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIMS3P0CW19 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMS3P0CW19 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.85■□□□□ 0.93
LIMS3P0CW19 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMS3P0CW19 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMS3P0CW19 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMS3P0CW19 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMS3P0CW19 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMS3P0CW19 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMS3P0CW19 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMS3P0CW19 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
LIMS3P0CW19 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.84■□□□□ 0.93
LIMS3P0CW19 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMS3P0CW19 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMS3P0CW19 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMS3P0CW19 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMS3P0CW19 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMS3P0CW19 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.83■□□□□ 0.93
LIMS3P0CW19 HLA-L-211ENST00000482052 1765 ntBASIC20.83■□□□□ 0.93
LIMS3P0CW19 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
LIMS3P0CW19 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMS3P0CW19 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMS3P0CW19 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.83■□□□□ 0.93
LIMS3P0CW19 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMS3P0CW19 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIMS3P0CW19 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.83■□□□□ 0.92
LIMS3P0CW19 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.92
LIMS3P0CW19 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIMS3P0CW19 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIMS3P0CW19 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMS3P0CW19 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
LIMS3P0CW19 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
LIMS3P0CW19 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMS3P0CW19 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
LIMS3P0CW19 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMS3P0CW19 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMS3P0CW19 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMS3P0CW19 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMS3P0CW19 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMS3P0CW19 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.81■□□□□ 0.92
LIMS3P0CW19 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMS3P0CW19 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMS3P0CW19 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
LIMS3P0CW19 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMS3P0CW19 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.81■□□□□ 0.92
LIMS3P0CW19 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIMS3P0CW19 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIMS3P0CW19 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIMS3P0CW19 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMS3P0CW19 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMS3P0CW19 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMS3P0CW19 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
LIMS3P0CW19 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIMS3P0CW19 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIMS3P0CW19 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIMS3P0CW19 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMS3P0CW19 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMS3P0CW19 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMS3P0CW19 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMS3P0CW19 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
LIMS3P0CW19 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMS3P0CW19 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIMS3P0CW19 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIMS3P0CW19 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
LIMS3P0CW19 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.79■□□□□ 0.92
LIMS3P0CW19 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMS3P0CW19 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMS3P0CW19 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
LIMS3P0CW19 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMS3P0CW19 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.78■□□□□ 0.92
LIMS3P0CW19 AC025884.2-201ENST00000553429 711 ntBASIC20.78■□□□□ 0.92
LIMS3P0CW19 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIMS3P0CW19 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LIMS3P0CW19 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LIMS3P0CW19 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIMS3P0CW19 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LIMS3P0CW19 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.77■□□□□ 0.92
LIMS3P0CW19 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms