Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 ABCA11P-201ENST00000451020 1815 ntTSL 2 BASIC8.15□□□□□ -1.13e-8■■■□□ 17
CDC40O60508 ZNF721-206ENST00000515578 1679 ntTSL 1 (best)7.97□□□□□ -1.133e-8■■■□□ 17
CDC40O60508 ZNF721-203ENST00000506646 935 ntTSL 2 BASIC6.84□□□□□ -1.313e-8■■■□□ 17
CDC40O60508 ABCA11P-204ENST00000514396 1423 ntTSL 1 (best)5.89□□□□□ -1.473e-8■■■□□ 17
CDC40O60508 ZNF721-204ENST00000507078 355 ntTSL 51.95□□□□□ -2.13e-8■■■□□ 17
CDC40O60508 GNL3-209ENST00000484022 668 ntTSL 23.55□□□□□ -1.841e-6■■■□□ 17
CDC40O60508 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.283e-6■■■□□ 16.9
CDC40O60508 SLCO4A1-208ENST00000497209 3092 ntTSL 1 (best)13.6□□□□□ -0.233e-6■■■□□ 16.9
CDC40O60508 SS18L1-203ENST00000450482 781 ntTSL 510.82□□□□□ -0.685e-7■■■□□ 16.9
CDC40O60508 SS18L1-201ENST00000331758 4493 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.985e-7■■■□□ 16.9
CDC40O60508 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.042e-7■■■□□ 16.9
CDC40O60508 XPO1-206ENST00000428210 6776 ntTSL 213.42□□□□□ -0.262e-7■■■□□ 16.9
CDC40O60508 XPO1-203ENST00000406957 3479 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.132e-7■■■□□ 16.9
CDC40O60508 XPO1-207ENST00000436018 318 ntTSL 43.17□□□□□ -1.92e-7■■■□□ 16.9
CDC40O60508 XPO1-209ENST00000443240 565 ntTSL 42.57□□□□□ -22e-7■■■□□ 16.9
CDC40O60508 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC13.26□□□□□ -0.297e-32■■■□□ 16.9
CDC40O60508 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.06□□□□□ -0.327e-32■■■□□ 16.9
CDC40O60508 CD99-208ENST00000482405 842 ntTSL 219.12■□□□□ 0.651e-7■■■□□ 16.8
CDC40O60508 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.651e-7■■■□□ 16.8
CDC40O60508 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.561e-7■■■□□ 16.8
CDC40O60508 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.561e-7■■■□□ 16.8
CDC40O60508 CD99-206ENST00000449611 604 ntAPPRIS ALT2 TSL 516.8■□□□□ 0.281e-7■■■□□ 16.8
CDC40O60508 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.211e-7■■■□□ 16.8
CDC40O60508 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.121e-7■■■□□ 16.8
CDC40O60508 CD99-211ENST00000623253 573 ntTSL 1 (best)15.18■□□□□ 0.021e-7■■■□□ 16.8
CDC40O60508 NEAT1-202ENST00000501122 22743 ntBASIC5.11□□□□□ -1.594e-32■■■□□ 16.8
CDC40O60508 CAPN15-207ENST00000568988 911 ntTSL 324.74■■□□□ 1.551e-6■■■□□ 16.8
CDC40O60508 CAPN15-202ENST00000562370 942 ntTSL 224.74■■□□□ 1.551e-6■■■□□ 16.8
CDC40O60508 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.261e-6■■■□□ 16.8
CDC40O60508 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.032e-15■■■□□ 16.7
CDC40O60508 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.392e-7■■■□□ 16.7
CDC40O60508 OAZ1-210ENST00000593012 1357 ntTSL 216.73■□□□□ 0.272e-7■■■□□ 16.7
CDC40O60508 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.222e-7■■■□□ 16.7
CDC40O60508 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.12e-7■■■□□ 16.7
CDC40O60508 OAZ1-201ENST00000581150 1131 ntTSL 515.4■□□□□ 0.062e-7■■■□□ 16.7
CDC40O60508 OAZ1-209ENST00000592787 857 ntTSL 215□□□□□ -0.012e-7■■■□□ 16.7
CDC40O60508 OAZ1-207ENST00000590943 1012 ntTSL 214.73□□□□□ -0.052e-7■■■□□ 16.7
CDC40O60508 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.372e-8■■■□□ 16.7
CDC40O60508 ASGR2-201ENST00000254850 1396 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.522e-8■■■□□ 16.7
CDC40O60508 ASGR2-202ENST00000355035 1386 ntTSL 1 (best) BASIC11.79□□□□□ -0.522e-8■■■□□ 16.7
CDC40O60508 RNU6-9-201ENST00000384776 107 ntBASIC1.49□□□□□ -2.171e-323■■■□□ 16.7
CDC40O60508 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.81■□□□□ 0.285e-6■■■□□ 16.6
CDC40O60508 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.245e-6■■■□□ 16.6
CDC40O60508 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.86■□□□□ 0.135e-6■■■□□ 16.6
CDC40O60508 BANP-214ENST00000466847 772 ntTSL 215.75■□□□□ 0.115e-6■■■□□ 16.6
CDC40O60508 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.62■□□□□ 0.095e-6■■■□□ 16.6
CDC40O60508 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.95□□□□□ -0.025e-6■■■□□ 16.6
CDC40O60508 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.62□□□□□ -0.075e-6■■■□□ 16.6
CDC40O60508 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.45□□□□□ -0.265e-6■■■□□ 16.6
CDC40O60508 BANP-224ENST00000565242 801 ntTSL 311.29□□□□□ -0.65e-6■■■□□ 16.6
CDC40O60508 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.369e-7■■■□□ 16.6
CDC40O60508 CCDC85C-201ENST00000380243 16393 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.716e-6■■■□□ 16.5
CDC40O60508 NAP1L1-219ENST00000551500 552 ntTSL 1 (best)5.07□□□□□ -1.62e-8■■■□□ 16.5
CDC40O60508 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.312e-6■■■□□ 16.5
CDC40O60508 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.6■□□□□ 0.576e-8■■■□□ 16.4
CDC40O60508 RPL3-208ENST00000460589 630 ntTSL 215.89■□□□□ 0.136e-8■■■□□ 16.4
CDC40O60508 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.29■□□□□ 0.046e-8■■■□□ 16.4
CDC40O60508 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.95□□□□□ -0.026e-8■■■□□ 16.4
CDC40O60508 RPL3-205ENST00000427905 782 ntTSL 513.04□□□□□ -0.326e-8■■■□□ 16.4
CDC40O60508 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.416e-8■■■□□ 16.4
CDC40O60508 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.416e-8■■■□□ 16.4
CDC40O60508 RPL3-206ENST00000453303 916 ntTSL 512.33□□□□□ -0.446e-8■■■□□ 16.4
CDC40O60508 RPL9-206ENST00000504470 689 ntTSL 212.11□□□□□ -0.476e-8■■■□□ 16.4
CDC40O60508 RPL3-217ENST00000484615 827 ntTSL 211.8□□□□□ -0.526e-8■■■□□ 16.4
CDC40O60508 RPL9-211ENST00000514842 2153 ntTSL 510.69□□□□□ -0.76e-8■■■□□ 16.4
CDC40O60508 RPL3-204ENST00000420536 711 ntTSL 58.51□□□□□ -1.056e-8■■■□□ 16.4
CDC40O60508 HCG18-234ENST00000413358 916 ntTSL 3 BASIC8.15□□□□□ -1.16e-8■■■□□ 16.4
CDC40O60508 RPL9-205ENST00000503277 769 ntTSL 28.09□□□□□ -1.116e-8■■■□□ 16.4
CDC40O60508 RPL9-209ENST00000511075 1028 ntTSL 24.93□□□□□ -1.626e-8■■■□□ 16.4
CDC40O60508 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.85□□□□□ -1.796e-8■■■□□ 16.4
CDC40O60508 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.876e-8■■■□□ 16.4
CDC40O60508 RPL9-202ENST00000437992 579 ntTSL 43.15□□□□□ -1.916e-8■■■□□ 16.4
CDC40O60508 RPL9-208ENST00000508595 667 ntTSL 33.13□□□□□ -1.916e-8■■■□□ 16.4
CDC40O60508 RPL9-204ENST00000503040 571 ntTSL 42.87□□□□□ -1.956e-8■■■□□ 16.4
CDC40O60508 SNHG1-221ENST00000544983 870 ntTSL 210.65□□□□□ -0.71e-14■■■□□ 16.4
CDC40O60508 SNHG1-215ENST00000540904 594 ntTSL 58.49□□□□□ -1.051e-14■■■□□ 16.4
CDC40O60508 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.25e-8■■■□□ 16.3
CDC40O60508 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.355e-8■■■□□ 16.3
CDC40O60508 NAP1L1-214ENST00000548273 818 ntTSL 312.05□□□□□ -0.485e-8■■■□□ 16.3
CDC40O60508 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC11.49□□□□□ -0.575e-8■■■□□ 16.3
CDC40O60508 NAP1L1-217ENST00000549988 544 ntTSL 311.22□□□□□ -0.615e-8■■■□□ 16.3
CDC40O60508 NAP1L1-206ENST00000544816 1597 ntTSL 2 BASIC11.16□□□□□ -0.625e-8■■■□□ 16.3
CDC40O60508 NAP1L1-210ENST00000547773 1967 ntTSL 5 BASIC10.36□□□□□ -0.755e-8■■■□□ 16.3
CDC40O60508 NAP1L1-205ENST00000542344 1675 ntTSL 2 BASIC10.22□□□□□ -0.775e-8■■■□□ 16.3
CDC40O60508 NAP1L1-215ENST00000549479 573 ntTSL 29.89□□□□□ -0.835e-8■■■□□ 16.3
CDC40O60508 NAP1L1-216ENST00000549596 1838 ntTSL 2 BASIC9.51□□□□□ -0.895e-8■■■□□ 16.3
CDC40O60508 NAP1L1-213ENST00000548044 1339 ntTSL 5 BASIC9.4□□□□□ -0.95e-8■■■□□ 16.3
CDC40O60508 NAP1L1-203ENST00000431879 2031 ntTSL 2 BASIC9.4□□□□□ -0.95e-8■■■□□ 16.3
CDC40O60508 NAP1L1-209ENST00000547704 760 ntTSL 59.27□□□□□ -0.935e-8■■■□□ 16.3
CDC40O60508 NAP1L1-221ENST00000551600 786 ntTSL 59.27□□□□□ -0.935e-8■■■□□ 16.3
CDC40O60508 NAP1L1-207ENST00000547479 623 ntTSL 58.96□□□□□ -0.985e-8■■■□□ 16.3
CDC40O60508 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.345e-8■■■□□ 16.3
CDC40O60508 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.79□□□□□ -1.645e-8■■■□□ 16.3
CDC40O60508 NAP1L1-218ENST00000550934 851 ntTSL 52.22□□□□□ -2.055e-8■■■□□ 16.3
CDC40O60508 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.373e-7■■■□□ 16.3
CDC40O60508 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.183e-7■■■□□ 16.3
CDC40O60508 CTBP1-205ENST00000504092 920 ntTSL 517.66■□□□□ 0.421e-6■■■□□ 16.3
CDC40O60508 CTBP1-210ENST00000510739 774 ntTSL 314.78□□□□□ -0.041e-6■■■□□ 16.3
CDC40O60508 CTBP1-206ENST00000504784 418 ntTSL 313.04□□□□□ -0.321e-6■■■□□ 16.3
CDC40O60508 MED16-209ENST00000592943 1628 ntTSL 1 (best)16.33■□□□□ 0.23e-6■■■□□ 16.3
Retrieved 100 of 5,364 protein–RNA pairs in 88 ms