Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC32.5■■■□□ 2.79
USP38Q8NB14 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
USP38Q8NB14 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC32.43■■■□□ 2.78
USP38Q8NB14 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC32.41■■■□□ 2.78
USP38Q8NB14 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
USP38Q8NB14 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC32.36■■■□□ 2.77
USP38Q8NB14 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC32.33■■■□□ 2.77
USP38Q8NB14 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
USP38Q8NB14 DYNLL1-208ENST00000550178 581 ntBASIC32.33■■■□□ 2.77
USP38Q8NB14 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC32.29■■■□□ 2.76
USP38Q8NB14 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC32.27■■■□□ 2.76
USP38Q8NB14 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC32.27■■■□□ 2.76
USP38Q8NB14 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC32.26■■■□□ 2.75
USP38Q8NB14 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC32.26■■■□□ 2.75
USP38Q8NB14 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
USP38Q8NB14 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
USP38Q8NB14 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC32.23■■■□□ 2.75
USP38Q8NB14 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
USP38Q8NB14 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
USP38Q8NB14 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC32.19■■■□□ 2.74
USP38Q8NB14 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC32.18■■■□□ 2.74
USP38Q8NB14 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC32.16■■■□□ 2.74
USP38Q8NB14 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC32.11■■■□□ 2.73
USP38Q8NB14 AL031258.1-201ENST00000623562 325 ntBASIC32.11■■■□□ 2.73
USP38Q8NB14 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.09■■■□□ 2.73
USP38Q8NB14 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC32.08■■■□□ 2.73
USP38Q8NB14 ILK-212ENST00000532063 1617 ntTSL 2 BASIC32.07■■■□□ 2.72
USP38Q8NB14 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
USP38Q8NB14 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP38Q8NB14 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP38Q8NB14 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC32.02■■■□□ 2.72
USP38Q8NB14 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
USP38Q8NB14 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
USP38Q8NB14 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
USP38Q8NB14 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.99■■■□□ 2.71
USP38Q8NB14 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.99■■■□□ 2.71
USP38Q8NB14 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.99■■■□□ 2.71
USP38Q8NB14 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.99■■■□□ 2.71
USP38Q8NB14 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
USP38Q8NB14 RPS2P35-201ENST00000443417 897 ntBASIC31.96■■■□□ 2.71
USP38Q8NB14 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.71
USP38Q8NB14 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.89■■■□□ 2.7
USP38Q8NB14 RARRES2P7-201ENST00000567349 469 ntBASIC31.86■■■□□ 2.69
USP38Q8NB14 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
USP38Q8NB14 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.8■■■□□ 2.68
USP38Q8NB14 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
USP38Q8NB14 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC31.79■■■□□ 2.68
USP38Q8NB14 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
USP38Q8NB14 AC097358.2-201ENST00000607541 1159 ntBASIC31.74■■■□□ 2.67
USP38Q8NB14 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.72■■■□□ 2.67
USP38Q8NB14 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.72■■■□□ 2.67
USP38Q8NB14 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.72■■■□□ 2.67
USP38Q8NB14 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
USP38Q8NB14 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP38Q8NB14 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP38Q8NB14 SUZ12P1-203ENST00000578195 985 ntBASIC31.66■■■□□ 2.66
USP38Q8NB14 AC136428.2-201ENST00000563187 214 ntBASIC31.64■■■□□ 2.66
USP38Q8NB14 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
USP38Q8NB14 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.63■■■□□ 2.65
USP38Q8NB14 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
USP38Q8NB14 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.58■■■□□ 2.65
USP38Q8NB14 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.55■■■□□ 2.64
USP38Q8NB14 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.51■■■□□ 2.63
USP38Q8NB14 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
USP38Q8NB14 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
USP38Q8NB14 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
USP38Q8NB14 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.49■■■□□ 2.63
USP38Q8NB14 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP38Q8NB14 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
USP38Q8NB14 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
USP38Q8NB14 SETD8P1-201ENST00000623146 1180 ntBASIC31.45■■■□□ 2.63
USP38Q8NB14 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
USP38Q8NB14 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
USP38Q8NB14 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
USP38Q8NB14 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.4■■■□□ 2.62
USP38Q8NB14 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.4■■■□□ 2.62
USP38Q8NB14 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
USP38Q8NB14 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.39■■■□□ 2.62
USP38Q8NB14 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
USP38Q8NB14 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
USP38Q8NB14 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.37■■■□□ 2.61
USP38Q8NB14 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
USP38Q8NB14 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
USP38Q8NB14 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
USP38Q8NB14 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC31.35■■■□□ 2.61
USP38Q8NB14 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.33■■■□□ 2.61
USP38Q8NB14 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.33■■■□□ 2.61
USP38Q8NB14 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP38Q8NB14 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
USP38Q8NB14 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.29■■■□□ 2.6
USP38Q8NB14 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.29■■■□□ 2.6
USP38Q8NB14 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
USP38Q8NB14 AC145285.7-201ENST00000614819 1539 ntBASIC31.28■■■□□ 2.6
USP38Q8NB14 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.27■■■□□ 2.6
USP38Q8NB14 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.22■■■□□ 2.59
USP38Q8NB14 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.2■■■□□ 2.59
USP38Q8NB14 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
USP38Q8NB14 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
USP38Q8NB14 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
USP38Q8NB14 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.15■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms